5NNF Transcription date Apr 08, 2017
title Crystal Structure Of The First Bromodomain Of Human Brd4 In With An Acetylated Baz1b Peptide (K221ac)
authors P.Filippakopoulos, S.Picaud, T.Krojer, F.Von Delft, C.H.Arrowsmi A.M.Edwards, C.Bountra
compound source
Molecule: Bromodomain-Containing Protein 4
Chain: A
Synonym: Protein Hunk1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd4, Hunk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Flph(Aly)Ydvkl
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.119 R_Free 0.144
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.439 43.915 79.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand ALY enzyme
Primary referenceInteractome Rewiring Following Pharmacological Targeting of BET Bromodomains., Lambert JP, Picaud S, Fujisawa T, Hou H, Savitsky P, Uuskula-Reimand L, Gupta GD, Abdouni H, Lin ZY, Tucholska M, Knight JDR, Gonzalez-Badillo B, St-Denis N, Newman JA, Stucki M, Pelletier L, Bandeira N, Wilson MD, Filippakopoulos P, Gingras AC, Mol Cell. 2018 Dec 13. pii: S1097-2765(18)30948-1. doi:, 10.1016/j.molcel.2018.11.006. PMID:30554943
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (5nnf.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 5NNF
  • CSU: Contacts of Structural Units for 5NNF
  • Structure Factors (1877 Kb)
  • Retrieve 5NNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NNF from S2C, [Save to disk]
  • View 5NNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NNF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nnf_A] [5nnf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NNF
  • Community annotation for 5NNF at PDBWiki (http://pdbwiki.org)

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