5NNX Transcription date Apr 10, 2017
title Tead1 Bound To Dna
authors E.Morgunova, A.Jolma, Y.Yin, A.Popov, J.Taipale
compound source
Molecule: Dna
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcriptional Enhancer Factor Tef-1
Chain: A
Synonym: Ntef-1,Protein Gt-Iic,Tea Domain Family Member 1,T Transcription Factor 13,Tcf-13;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead1, Tcf13, Tef1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a
symmetry Space Group: H 3 2
R_factor 0.196 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.300 112.300 157.562 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.29 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5nnx.pdb1.gz) 86 Kb
  • CSU: Contacts of Structural Units for 5NNX
  • Structure Factors (245 Kb)
  • Retrieve 5NNX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NNX from S2C, [Save to disk]
  • Re-refined 5nnx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NNX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NNX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nnx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nnx_A] [5nnx_C] [5nnx_F] [5nnx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NNX
  • Community annotation for 5NNX at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science