5NO0 Transport Protein date Apr 10, 2017
title Beta Domain Of Human Transcobalamin In Apo Form
authors J.S.Bloch, K.P.Locher
compound source
Molecule: Transcobalamin-2
Chain: A
Synonym: Tc-2,Transcobalamin II,Tcii
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tcn2, Tc2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 32 2 1
R_factor 0.155 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.979 59.979 70.044 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.57 Å
ligand GOL enzyme
Primary referenceStructure of the human transcobalamin beta domain in four distinct states., Bloch JS, Ruetz M, Krautler B, Locher KP, PLoS One. 2017 Sep 14;12(9):e0184932. doi: 10.1371/journal.pone.0184932., eCollection 2017. PMID:28910388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5no0.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5NO0
  • CSU: Contacts of Structural Units for 5NO0
  • Structure Factors (438 Kb)
  • Retrieve 5NO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NO0 from S2C, [Save to disk]
  • View 5NO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NO0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5no0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NO0
  • Community annotation for 5NO0 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science