5NO1	Viral Protein	date	Apr 10, 2017
title	Crystal Structure Of The Prototype Foamy Virus (Pfv) Intasom Complex With Magnesium And The Insti Xz407 (Compound 5g)
authors	V.E.Pye, P.Cherepanov
compound		source
Molecule: Integrase Chain: A, B Synonym: Pr125pol Ec: 2.7.7.49,2.7.7.7,3.1.26.4,3.4.23.-,2.7.7.-,3.1.-.- Engineered: Yes Other_details: G217s, S218g = Natural Variance		Organism_scientific: Human Spumaretrovirus Organism_common: Sfvcpz(Hu) Organism_taxid: 11963 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'- D(Aptptpgptpcpaptpgpgpapaptptptpcpgpcpa) Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Tpgpcpgpapapaptptpcpcpaptpgpapcpa)-3'); Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 41 21 2	R_factor 0.177 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.570 158.570 123.060 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	GOL, HEZ, MES, MG, SO4, XZ4, ZN	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-Guided Optimization of HIV Integrase Strand Transfer Inhibitors., Zhao XZ, Smith SJ, Maskell DP, Metifiot M, Pye VE, Fesen K, Marchand C, Pommier Y, Cherepanov P, Hughes SH, Burke TR, J Med Chem. 2017 Jul 24. doi: 10.1021/acs.jmedchem.7b00596. PMID:28737946

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk] Biological Unit Coordinates (5no1.pdb1.gz) 443 Kb LPC: Ligand-Protein Contacts for 5NO1 CSU: Contacts of Structural Units for 5NO1 Structure Factors (792 Kb) Retrieve 5NO1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NO1 from S2C, [Save to disk] Re-refined 5no1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5no1_A] [5no1_B] [5no1_D] [5no1_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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