5NO2 Ribosome date Apr 10, 2017
title Rsga-Gdpnp Bound To The 30s Ribosomal Subunit (Rsga Assembly Intermediate)
authors J.P.Lopez-Alonso, T.Kaminishi, T.Kikuchi, Y.Hirata, I.Iturrioz, N A.Schedlbauer, Y.Hase, S.Goto, D.Kurita, A.Muto, S.Zhou, C.Naoe, D D.Gil-Carton, C.Takemoto, H.Himeno, P.Fucini, S.R.Connell
compound source
Molecule: 16s Ribosomal Rna
Chain: A
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S4
Chain: D
Synonym: Small Ribosomal Subunit Protein Us4

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S5
Chain: E
Synonym: Small Ribosomal Subunit Protein Us5

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S6
Chain: F
Synonym: Small Ribosomal Subunit Protein Bs6

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S7
Chain: G
Synonym: Small Ribosomal Subunit Protein Us7

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S8
Chain: H
Synonym: Small Ribosomal Subunit Protein Us8

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S9
Chain: I
Synonym: Small Ribosomal Subunit Protein Us9

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S10
Chain: J
Synonym: Small Ribosomal Subunit Protein Us10

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S11
Chain: K
Synonym: Small Ribosomal Subunit Protein Us11

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S12
Chain: L
Synonym: Small Ribosomal Subunit Protein Us12

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S13
Chain: M
Synonym: Small Ribosomal Subunit Protein Us13

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S14
Chain: N
Synonym: Small Ribosomal Subunit Protein Us14

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S15
Chain: O
Synonym: Small Ribosomal Subunit Protein Us15

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S16
Chain: P
Synonym: Small Ribosomal Subunit Protein Bs16

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S17
Chain: Q
Synonym: Small Ribosomal Subunit Protein Us17

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S18
Chain: R
Synonym: Small Ribosomal Subunit Protein Bs18

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S19
Chain: S
Synonym: Small Ribosomal Subunit Protein Us19

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S20
Chain: T
Synonym: Small Ribosomal Subunit Protein Bs20

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333

Molecule: Small Ribosomal Subunit Biogenesis Gtpase Rsga
Chain: Z
Ec: 3.6.1.-
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Gene: Rsga, Engc, Yjeq, B4161, Jw4122
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P7xnh3
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.16 Å
ligand 2MG, 4OC, 5MC, G7M, GNP, MA6, MG, PSU, UR3, ZN enzyme Hydrolase E.C.3.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
D


E


F


G


H


I


J


K


M


N


O
  • mRNA binding involved in pos...


  • P
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


  • Q


    R


    S


    T
  • ornithine decarboxylase inhi...


  • Z


    Primary referenceRsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket., Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR, Nucleic Acids Res. 2017 May 8. doi: 10.1093/nar/gkx324. PMID:28482099
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (872 Kb) [Save to disk]
  • Biological Unit Coordinates (5no2.pdb1.gz) 862 Kb
  • LPC: Ligand-Protein Contacts for 5NO2
  • CSU: Contacts of Structural Units for 5NO2
  • Retrieve 5NO2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NO2 from S2C, [Save to disk]
  • View 5NO2 in 3D
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5no2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5no2_J] [5no2_T] [5no2_R] [5no2_S] [5no2_M] [5no2_F] [5no2_A] [5no2_Z] [5no2_K] [5no2_N] [5no2] [5no2_D] [5no2_H] [5no2_P] [5no2_Q] [5no2_O] [5no2_E] [5no2_L] [5no2_G] [5no2_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NO2
  • Community annotation for 5NO2 at PDBWiki (http://pdbwiki.org)

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