5NO6 Transcription date Apr 11, 2017
title Tead4-Hoxb13 Complex Bound To Dna
authors E.Morgunova, A.Jolma, Y.Yin, A.Popov, J.Taipale
compound source
Molecule: Homeobox Protein Hox-B13
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hoxb13
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a

Molecule: Dna
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna
Chain: F, E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcriptional Enhancer Factor Tef-3
Chain: I, N
Synonym: Tea Domain Family Member 4,Tead-4,Transcription Fa Like 1,Transcription Factor Rtef-1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead4, Rtef1, Tcf13l1, Tef3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a
symmetry Space Group: I 1 2 1
R_factor 0.240 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.659 56.674 144.993 90.00 93.81 90.00
method X-Ray Diffractionresolution 2.88 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5no6.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (5no6.pdb2.gz) 38 Kb
  • CSU: Contacts of Structural Units for 5NO6
  • Structure Factors (553 Kb)
  • Retrieve 5NO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NO6 from S2C, [Save to disk]
  • View 5NO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NO6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5no6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5no6_D] [5no6_N] [5no6_E] [5no6_F] [5no6_B] [5no6_I] [5no6_A] [5no6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NO6
  • Community annotation for 5NO6 at PDBWiki (http://pdbwiki.org)

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