5NP1 Transferase date Apr 13, 2017
title Open Protomer Of Human Atm (Ataxia Telangiectasia Mutated)
authors D.Baretic, H.K.Pollard, D.I.Fisher, C.M.Johnson, B.Santhanam, C.M T.Kouba, A.R.Fersht, C.Phillips, R.L.Williams
compound source
Molecule: Serine-Protein Kinase Atm
Chain: A
Synonym: Ataxia Telangiectasia Mutated,A-T Mutated
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hek293
Gene: Atm
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest12.2-Orip
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.70 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • 1-phosphatidylinositol-3-kin...
  • meiotic telomere clustering
  • establishment of RNA localiz...

  • Primary referenceStructures of closed and open conformations of dimeric human ATM., Baretic D, Pollard HK, Fisher DI, Johnson CM, Santhanam B, Truman CM, Kouba T, Fersht AR, Phillips C, Williams RL, Sci Adv. 2017 May 10;3(5):e1700933. doi: 10.1126/sciadv.1700933. eCollection 2017, May. PMID:28508083
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk]
  • Biological Unit Coordinates (5np1.pdb1.gz) 228 Kb
  • CSU: Contacts of Structural Units for 5NP1
  • Retrieve 5NP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NP1 from S2C, [Save to disk]
  • View 5NP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NP1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5np1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5np1_A] [5np1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NP1
  • Community annotation for 5NP1 at PDBWiki (http://pdbwiki.org)

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