5NQA Transferase date Apr 19, 2017
title Crystal Structure Of Galnac-T4 In Complex With The Monoglyco
authors M.De Las Rivas, E.Lira-Navarrete, E.J.P.Daniel, I.Companon, H.Co A.Diniz, J.Jimenez-Barbero, J.M.Peregrina, H.Clausen, F.Corzana F.Marcelo, G.Jimenez-Oses, T.A.Gerken, R.Hurtado-Guerrero
compound source
Molecule: Polypeptide N-Acetylgalactosaminyltransferase 4
Chain: A, B
Synonym: Polypeptide Galnac Transferase 4,Pp-Gantase 4,Prot
Acetylgalactosaminyltransferase 4,Udp-Galnac: Polypeptide N- Acetylgalactosaminyltransferase 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Galnt4
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922

Molecule: Monoglycopeptide 3
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.225 R_Free 0.274
length a length b length c angle alpha angle beta angle gamma
65.447 79.881 88.614 116.47 96.74 104.72
method X-Ray Diffractionresolution 1.90 Å
enzyme Transferase E.C. BRENDA
A, B

Primary referenceThe interdomain flexible linker of the polypeptide GalNAc transferases dictates their long-range glycosylation preferences., Rivas ML, Lira-Navarrete E, Daniel EJP, Companon I, Coelho H, Diniz A, Jimenez-Barbero J, Peregrina JM, Clausen H, Corzana F, Marcelo F, Jimenez-Oses G, Gerken TA, Hurtado-Guerrero R, Nat Commun. 2017 Dec 5;8(1):1959. doi: 10.1038/s41467-017-02006-0. PMID:29208955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (5nqa.pdb1.gz) 183 Kb
  • Biological Unit Coordinates (5nqa.pdb2.gz) 189 Kb
  • CSU: Contacts of Structural Units for 5NQA
  • Structure Factors (4813 Kb)
  • Retrieve 5NQA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NQA from S2C, [Save to disk]
  • View 5NQA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NQA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nqa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nqa_B] [5nqa_G] [5nqa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NQA
  • Community annotation for 5NQA at PDBWiki (http://pdbwiki.org)

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