5NRR Transferase date Apr 25, 2017
title Human Dnmt3b Pwwp Domain In Complex With 5-[(2-Hydroxyethyl) Amino]-1-Pentanol
authors G.Rondelet, J.Wouters
compound source
Molecule: Dna (Cytosine-5)-Methyltransferase 3b
Chain: A, B
Synonym: Dnmt3b,Dna Methyltransferase Hsaiiib,M.Hsaiiib
Ec: 2.1.1.37
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnmt3b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 32 2 1
R_factor 0.194 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.502 73.502 159.958 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand 96E, SO4 enzyme Transferase E.C.2.1.1.37 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (5nrr.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 5NRR
  • CSU: Contacts of Structural Units for 5NRR
  • Structure Factors (1056 Kb)
  • Retrieve 5NRR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NRR from S2C, [Save to disk]
    • View 5NRR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NRR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nrr_A] [5nrr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NRR
  • Community annotation for 5NRR at PDBWiki (http://pdbwiki.org)

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