5NTU Signaling Protein date Apr 28, 2017
title Crystal Structure Of Human Pro-Myostatin Precursor At 2.6 A
authors T.R.Cotton, G.Fischer, M.Hyvonen
compound source
Molecule: Growthdifferentiation Factor 8
Chain: A, B
Fragment: Pro-Myostatin Precursor
Synonym: Gdf-8,Myostatin
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mstn, Gdf8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phat2
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.157 36.301 120.448 90.00 104.39 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand CL, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the human myostatin precursor and determinants of growth factor latency., Cotton TR, Fischer G, Wang X, McCoy JC, Czepnik M, Thompson TB, Hyvonen M, EMBO J. 2018 Jan 12. pii: embj.201797883. doi: 10.15252/embj.201797883. PMID:29330193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (5ntu.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 5NTU
  • CSU: Contacts of Structural Units for 5NTU
  • Structure Factors (2633 Kb)
  • Retrieve 5NTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NTU from S2C, [Save to disk]
  • View 5NTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NTU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ntu_B] [5ntu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NTU
  • Community annotation for 5NTU at PDBWiki (http://pdbwiki.org)

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