5NV6 Structural Protein date May 03, 2017
title Structure Of Human Transforming Growth Factor Beta-Induced P (Tgfbip).
authors R.Garcia-Castellanos, S.N.Nielsen, K.Runager, B.I.Thogersen, T.G J.J.Enghild, F.X.Gomis-Ruth
compound source
Molecule: Transforming Growth Factor-Beta-Induced Protein I
Chain: A, B
Synonym: Beta Ig-H3,Kerato-Epithelin,Rgd-Containing Collage Associated Protein,Rgd-Cap;
Engineered: Yes
Other_details: The Purified And Crystallised Protein Is Fro Ala647. The First 23 Amino Acids Are Forming A Signal Pepti Is Removed During Expression. Also, There Is A Truncation A Ala647 During The Expression.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbi, Bigh3
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 61
R_factor 0.219 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.840 114.840 181.240 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.93 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and Functional Implications of Human Transforming Growth Factor beta-Induced Protein, TGFBIp, in Corneal Dystrophies., Garcia-Castellanos R, Nielsen NS, Runager K, Thogersen IB, Lukassen MV, Poulsen ET, Goulas T, Enghild JJ, Gomis-Ruth FX, Structure. 2017 Sep 27. pii: S0969-2126(17)30292-7. doi:, 10.1016/j.str.2017.09.001. PMID:28988748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (394 Kb) [Save to disk]
  • Biological Unit Coordinates (5nv6.pdb1.gz) 197 Kb
  • Biological Unit Coordinates (5nv6.pdb2.gz) 196 Kb
  • CSU: Contacts of Structural Units for 5NV6
  • Structure Factors (275 Kb)
  • Retrieve 5NV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NV6 from S2C, [Save to disk]
  • View 5NV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NV6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nv6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nv6_B] [5nv6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NV6
  • Community annotation for 5NV6 at PDBWiki (http://pdbwiki.org)

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