5NW4 Motor Protein date May 05, 2017
title Human Cytoplasmic Dynein-1 Bound To Dynactin And An N-Termin Construct Of Bicd2
authors K.Zhang, H.E.Foster, A.P.Carter
compound source
Molecule: Dynein Heavy Chain
Chain: B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dynein Intermediate Chain
Chain: D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dynein Intermediate Chain
Chain: C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dynein Heavy Chain
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dynein N-Terminal Dimerization Domain
Chain: 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dynein N-Terminal Dimerization Domain
Chain: 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Robl
Chain: R, S
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dynein Light Intermediate Chain
Chain: E
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dynein Light Intermediate Chain
Chain: F
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Arp1
Chain: G, H, O, P, Q, T, U, W
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Beta-Actin
Chain: V
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Arp11
Chain: X
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Capping Protein (Actin Filament) Muscle Z-Line, A
Chain: Y
Synonym: F-Actin Capping Protein Alpha 1 Subunit,F-Actin Ca Protein Subunit Alpha 1;
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: F-Actin Capping Protein Beta Subunit Variant II
Chain: Z
Synonym: F-Actin-Capping Protein Subunit Beta,F-Actin-Cappi Subunit Beta Isoform 2;
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Shoulder Complex
Chain: a
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Shoulder Complex
Chain: b
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Shoulder Complex
Chain: c, d
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Shoulder Complex
Chain: e, f
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin 6
Chain: g
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Subunit 5
Chain: h
Synonym: Dynactin Subunit P25
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Pointed End P62
Chain: I
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: P150
Chain: j
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin
Chain: k
Synonym: Dynactin Subunit 2
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin
Chain: l
Synonym: Dynactin Subunit 2
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin
Chain: m
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin
Chain: n
Synonym: Dynactin Subunit 2
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin P150
Chain: o
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Bicd2n
Chain: 5, 6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.70 Å
Gene
Ontology
ChainFunctionProcessComponent
X
  • retrograde axonal transport ...

    • Y


    Z


    g


    h


    l


    Primary referenceCryo-EM Reveals How Human Cytoplasmic Dynein Is Auto-inhibited and Activated., Zhang K, Foster HE, Rondelet A, Lacey SE, Bahi-Buisson N, Bird AW, Carter AP, Cell. 2017 Jun 15;169(7):1303-1314.e18. doi: 10.1016/j.cell.2017.05.025. Epub, 2017 Jun 8. PMID:28602352
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1239 Kb) [Save to disk]
  • Biological Unit Coordinates (5nw4.pdb1.gz) 1227 Kb
  • CSU: Contacts of Structural Units for 5NW4
  • Retrieve 5NW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NW4 from S2C, [Save to disk]
    • View 5NW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NW4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nw4_2] [5nw4_R] [5nw4_O] [5nw4_E] [5nw4_d] [5nw4_A] [5nw4_l] [5nw4_j] [5nw4_1] [5nw4_a] [5nw4_f] [5nw4_5] [5nw4_c] [5nw4_h] [5nw4_Z] [5nw4_B] [5nw4_C] [5nw4_H] [5nw4_e] [5nw4_U] [5nw4_Q] [5nw4_Y] [5nw4_6] [5nw4_V] [5nw4_D] [5nw4_k] [5nw4_i] [5nw4_W] [5nw4_g] [5nw4_o] [5nw4_P] [5nw4_X] [5nw4_b] [5nw4_F] [5nw4_T] [5nw4_m] [5nw4_n] [5nw4_G] [5nw4_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NW4
  • Community annotation for 5NW4 at PDBWiki (http://pdbwiki.org)

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