5NXP Lyase date May 10, 2017
title Carbonic Anhydrase II Inhibitor Ra7
authors J.Brynda, P.Rezacova, M.Horejsi, J.Fanfrlik
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.128 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.911 41.040 71.519 90.00 104.31 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand 9DH, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRanking Power of the SQM/COSMO Scoring Function on Carbonic Anhydrase II-Inhibitor Complexes., Pecina A, Brynda J, Vrzal L, Gnanasekaran R, Horejsi M, Eyrilmez S, Rezac J, Lepsik M, Rezacova P, Hobza P, Majer P, Veverka V, Fanfrlik J, Chemphyschem. 2018 Jan 8. doi: 10.1002/cphc.201701104. PMID:29316128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (5nxp.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 5NXP
  • CSU: Contacts of Structural Units for 5NXP
  • Structure Factors (1535 Kb)
  • Retrieve 5NXP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NXP from S2C, [Save to disk]
    • View 5NXP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NXP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nxp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NXP
  • Community annotation for 5NXP at PDBWiki (http://pdbwiki.org)

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