5NYF		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MSE, NA, PO4	enzyme
Gene	HYPMC
Gene Ontology	Chain Function Process Component A
Primary reference	On the Trails of the Proteasome Fold: Structural and Functional Analysis of the Ancestral beta-Subunit Protein Anbu., Vielberg MT, Bauer VC, Groll M, J Mol Biol. 2018 Feb 2. pii: S0022-2836(18)30007-X. doi:, 10.1016/j.jmb.2018.01.004. PMID:29355501

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (5nyf.pdb1.gz) 140 Kb LPC: Ligand-Protein Contacts for 5NYF CSU: Contacts of Structural Units for 5NYF Structure Factors (173 Kb) Retrieve 5NYF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NYF from S2C, [Save to disk] Re-refined 5nyf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5NYF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nyf] [5nyf_A] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---