5O07 Lyase date May 16, 2017
title The Crystal Structure Of The Human Carbonic Anhydrase II In With A Nitroimidazole Sulfamate Inhibitor
authors V.Alterio, G.De Simone, D.Esposito
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm13
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.250 41.252 71.733 90.00 104.26 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 1VQ, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into the binding mode of sulphamates and sulphamides to hCA II: crystallographic studies and binding free energy calculations., De Simone G, Langella E, Esposito D, Supuran CT, Monti SM, Winum JY, Alterio V, J Enzyme Inhib Med Chem. 2017 Dec;32(1):1002-1011. doi:, 10.1080/14756366.2017.1349764. PMID:28738704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5o07.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 5O07
  • CSU: Contacts of Structural Units for 5O07
  • Structure Factors (353 Kb)
  • Retrieve 5O07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O07 from S2C, [Save to disk]
  • Re-refined 5o07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5O07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O07
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o07_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O07
  • Community annotation for 5O07 at PDBWiki (http://pdbwiki.org)

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