5O2V Rna Binding Protein date May 22, 2017
title Nmr Structure Of Tia-1 Rrm1 Domain
authors P.K.A.Jagtap
compound source
Molecule: Nucleolysin Tia-1 Isoform P40
Chain: A
Fragment: Rrm1 Domain, Unp Residues 1-92
Synonym: Rna-Binding Protein Tia-1,T-Cell-Restricted Intrac Antigen-1,Tia-1,P40-Tia-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tia1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSegmental, Domain-Selective Perdeuteration and Small-Angle Neutron Scattering for Structural Analysis of Multi-Domain Proteins., Sonntag M, Jagtap PKA, Simon B, Appavou MS, Geerlof A, Stehle R, Gabel F, Hennig J, Sattler M, Angew Chem Int Ed Engl. 2017 Aug 1;56(32):9322-9325. doi: 10.1002/anie.201702904., Epub 2017 Jul 5. PMID:28636238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • Biological Unit Coordinates (5o2v.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 5O2V
  • Original NMR restraints for 5O2V from PDB
  • Retrieve 5O2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O2V from S2C, [Save to disk]
  • View 5O2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O2V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o2v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O2V
  • Community annotation for 5O2V at PDBWiki (http://pdbwiki.org)

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