5O32 Immune System date May 23, 2017
title The Structure Of Complement Complex
authors X.Xue, J.Wu, F.Forneris, P.Gros
compound source
Molecule: Complement C3
Chain: A, E
Fragment: Beta Chain, Unp Residues 23-667
Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 1;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Complement C3
Chain: B, F
Fragment: Alpha Chain, Unp Residues 749-1663
Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Complement Factor H,Complement Factor H
Chain: C, G
Fragment: Unp Residues 19-264,Unp Residues 1107-1230,Unp Re 264,Unp Residues 1107-1230;
Synonym: H Factor 1,H Factor 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cfh, Hf, Hf1, Hf2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293e

Molecule: Complement Factor I
Chain: D, H
Fragment: Unp Residues 19-339
Synonym: C3bc4b Inactivator
Ec: 3.4.21.45
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cfi, If
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293e

Molecule: Complement Factor I
Chain: I, J
Fragment: Unp Residues 340-583
Synonym: C3bc4b Inactivator
Ec: 3.4.21.45
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cfi, If
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293e
symmetry Space Group: P 1
R_factor 0.229 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.370 122.790 157.200 69.76 76.10 70.13
method X-Ray Diffractionresolution 4.21 Å
ligand BMA, CA, MLI, NAG enzyme Hydrolase E.C.3.4.21.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


F, B


H, D


J, I


Primary referenceRegulator-dependent mechanisms of C3b processing by factor I allow differentiation of immune responses., Xue X, Wu J, Ricklin D, Forneris F, Di Crescenzio P, Schmidt CQ, Granneman J, Sharp TH, Lambris JD, Gros P, Nat Struct Mol Biol. 2017 Aug;24(8):643-651. doi: 10.1038/nsmb.3427. Epub 2017, Jul 3. PMID:28671664
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1672 Kb) [Save to disk]
  • Biological Unit Coordinates (5o32.pdb1.gz) 1654 Kb
  • LPC: Ligand-Protein Contacts for 5O32
  • CSU: Contacts of Structural Units for 5O32
  • Structure Factors (551 Kb)
  • Retrieve 5O32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O32 from S2C, [Save to disk]
  • Re-refined 5o32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5O32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O32
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o32_H] [5o32_F] [5o32_G] [5o32_D] [5o32_C] [5o32_I] [5o32_J] [5o32_E] [5o32_B] [5o32_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O32
  • Community annotation for 5O32 at PDBWiki (http://pdbwiki.org)

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