5O3O Protein Fibril date May 24, 2017
title Pronase-Treated Paired Helical Filament In Alzheimer'S Disea
authors A.W.P.Fitzpatrick, B.Falcon, S.He, A.G.Murzin, G.Murshudov, H.G.G R.A.Crowther, B.Ghetti, M.Goedert, S.H.W.Scheres
compound source
Molecule: Microtubule-Associated Protein Tau
Chain: A, B, C, D, E, F, G, H, I, J
Fragment: Unp Residues 623-695
Synonym: Neurofibrillary Tangle Protein,Paired Helical Fila Phf-Tau
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceCryo-EM structures of tau filaments from Alzheimer's disease., Fitzpatrick AWP, Falcon B, He S, Murzin AG, Murshudov G, Garringer HJ, Crowther RA, Ghetti B, Goedert M, Scheres SHW, Nature. 2017 Jul 13;547(7662):185-190. doi: 10.1038/nature23002. Epub 2017 Jul 5. PMID:28678775
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (5o3o.pdb1.gz) 192 Kb
  • CSU: Contacts of Structural Units for 5O3O
  • Retrieve 5O3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O3O from S2C, [Save to disk]
    • View 5O3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O3O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o3o_F] [5o3o_B] [5o3o_G] [5o3o_D] [5o3o_E] [5o3o_A] [5o3o_H] [5o3o_C] [5o3o_J] [5o3o_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O3O
  • Community annotation for 5O3O at PDBWiki (http://pdbwiki.org)

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