5O57 Signaling Protein date Jun 01, 2017
title Solution Structure Of The N-Terminal Region Of Dkk4
authors L.C.Waters, S.Patel, A.M.Barkell, F.W.Muskett, M.K.Robinson, G.Ho M.D.Carr
compound source
Molecule: Dickkopf-Related Protein 4
Chain: A
Synonym: Hdkk-4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dkk4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pleics-05
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional analysis of Dickkopf 4 (Dkk4): new insights into Dkk evolution and regulation of Wnt signalling by Dkk and Kremen proteins., Patel S, Barkell AM, Gupta D, Strong SL, Bruton S, Muskett FW, Addis PW, Renshaw PS, Slocombe PM, Doyle C, Clargo A, Taylor RJ, Prosser CE, Henry AJ, Robinson MK, Waters LC, Holdsworth G, Carr MD, J Biol Chem. 2018 Jun 20. pii: RA118.002918. doi: 10.1074/jbc.RA118.002918. PMID:29925589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1957 Kb) [Save to disk]
  • Biological Unit Coordinates (5o57.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 5O57
  • Original NMR restraints for 5O57 from PDB
  • Retrieve 5O57 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O57 from S2C, [Save to disk]
    • View 5O57 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O57
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o57_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O57
  • Community annotation for 5O57 at PDBWiki (http://pdbwiki.org)

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