5O5J Ribosome date Jun 02, 2017
title Structure Of The 30s Small Ribosomal Subunit From Mycobacter Smegmatis
authors J.Hentschel, C.Burnside, I.Mignot, M.Leibundgut, D.Boehringer, N.
compound source
Molecule: 16s Rrna
Chain: A
 Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: Conserved Domain Protein
Chain: B
Synonym: Bs22,30s Ribosomal Protein Bs22
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S3
Chain: C
Synonym: Us3
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S4
Chain: D
Synonym: Us4
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S5
Chain: E
Synonym: Us5
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S6
Chain: F
Synonym: Bs6
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S7
Chain: G
Synonym: Us7
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S8
Chain: H
Synonym: Us8
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S9
Chain: I
Synonym: Us9
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S10
Chain: J
Synonym: Us10
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S11
Chain: K
Synonym: Us11
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S12
Chain: L
Synonym: Us12
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S13
Chain: M
Synonym: Us13
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S14 Type Z
Chain: N
Synonym: Us14
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S15
Chain: O
Synonym: Us15
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S16
Chain: P
Synonym: Bs16
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S17
Chain: Q
Synonym: Us17
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S18 2
Chain: R
Synonym: Bs18
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S19
Chain: S
Synonym: Us19
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S20
Chain: T
Synonym: Bs20
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 30s Ribosomal Protein S2
Chain: V
Synonym: Us2
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: Trna-Phe Anticodon Stem
Chain: W
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: Mrna Fragment
Chain: X
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L31
Chain: g
Synonym: Bl31
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.45 Å
ligand MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


V


g


Primary referenceThe Complete Structure of the Mycobacterium smegmatis 70S Ribosome., Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N, Cell Rep. 2017 Jul 5;20(1):149-160. doi: 10.1016/j.celrep.2017.06.029. PMID:28683309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1056 Kb) [Save to disk]
  • Biological Unit Coordinates (5o5j.pdb1.gz) 1042 Kb
  • LPC: Ligand-Protein Contacts for 5O5J
  • CSU: Contacts of Structural Units for 5O5J
  • Retrieve 5O5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O5J from S2C, [Save to disk]
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  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o5j_I] [5o5j_X] [5o5j_J] [5o5j_O] [5o5j_F] [5o5j_P] [5o5j_Q] [5o5j_A] [5o5j_K] [5o5j_R] [5o5j_G] [5o5j_V] [5o5j_C] [5o5j_T] [5o5j_M] [5o5j_D] [5o5j_E] [5o5j_B] [5o5j_g] [5o5j_W] [5o5j_L] [5o5j_S] [5o5j_H] [5o5j_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O5J
  • Community annotation for 5O5J at PDBWiki (http://pdbwiki.org)

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