5O60 Ribosome date Jun 02, 2017
title Structure Of The 50s Large Ribosomal Subunit From Mycobacter Smegmatis
authors J.Hentschel, C.Burnside, I.Mignot, M.Leibundgut, D.Boehringer, N.
compound source
Molecule: 50s Ribosomal Protein Bl37
Chain: 3
Synonym: Bl37
 Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 23s Rrna
Chain: A
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 5s Rrna
Chain: B
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L2
Chain: C
Synonym: Ul2
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L3
Chain: D
Synonym: Ul3
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L4
Chain: E
Synonym: Ul4
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L5
Chain: F
Synonym: Ul5
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L6
Chain: G
Synonym: Ul6
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L9
Chain: H
Synonym: Bl9
Other_details: Residues 44 To 73 Modeled As Poly-Alanine
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L10
Chain: I
Synonym: Ul10
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L11
Chain: J
Synonym: Ul11
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L13
Chain: K
Synonym: Ul13
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L14
Chain: L
Synonym: Ul14
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L15
Chain: M
Synonym: Ul15
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L16
Chain: N
Synonym: Ul16
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L17
Chain: O
Synonym: Bl17
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L18
Chain: P
Synonym: Ul18
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L19
Chain: Q
Synonym: Bl19
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L20
Chain: R
Synonym: Bl20
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L21
Chain: S
Synonym: Bl21
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L22
Chain: T
Synonym: Ul22
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L23
Chain: U
Synonym: Ul23
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L24
Chain: V
Synonym: Ul24
Other_details: Residues 48 To 55 Not Modeled
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L25
Chain: W
Synonym: Bl25,General Stress Protein Ctc
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L27
Chain: X
Synonym: Bl27
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L28
Chain: Y
Synonym: Bl28
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L29
Chain: Z
Synonym: Ul29
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L30
Chain: a
Synonym: Ul30
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L32
Chain: b
Synonym: Bl32
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L33 1
Chain: c
Synonym: Bl33
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L34
Chain: d
Synonym: Bl34
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L35
Chain: e
Synonym: Bl35
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L36
Chain: f
Synonym: Bl36
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: 50s Ribosomal Protein L31
Chain: g
Synonym: Bl31
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196

Molecule: Trna Cca-End Acetylated (Phe)
Chain: 2
Other_details: Trna Cca Polyribonucleotid, Acetylated (Phe)
Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
ligand MG, PHE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Y


Z


a


b


c


d


e


f


g


Primary referenceThe Complete Structure of the Mycobacterium smegmatis 70S Ribosome., Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N, Cell Rep. 2017 Jul 5;20(1):149-160. doi: 10.1016/j.celrep.2017.06.029. PMID:28683309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1979 Kb) [Save to disk]
  • Biological Unit Coordinates (5o60.pdb1.gz) 1957 Kb
  • LPC: Ligand-Protein Contacts for 5O60
  • CSU: Contacts of Structural Units for 5O60
  • Retrieve 5O60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O60 from S2C, [Save to disk]
    • View 5O60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O60
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o60_G] [5o60_E] [5o60_T] [5o60_N] [5o60_Q] [5o60_X] [5o60_Y] [5o60_R] [5o60_3] [5o60_A] [5o60_I] [5o60_c] [5o60_g] [5o60_U] [5o60_K] [5o60_L] [5o60_P] [5o60_b] [5o60_Z] [5o60_M] [5o60_W] [5o60_H] [5o60_d] [5o60_e] [5o60_J] [5o60_B] [5o60_F] [5o60_a] [5o60_2] [5o60_C] [5o60_S] [5o60_O] [5o60_D] [5o60_V] [5o60_f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O60
  • Community annotation for 5O60 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science