5O6J Transferase date Jun 06, 2017
title Human Nmt1 In Complex With Myristoyl-Coa And Inhibitor Imp-1
authors J.A.Brannigan, A.J.Wilkinson
compound source
Molecule: Glycylpeptide N-Tetradecanoyltransferase 1
Chain: A, B
Synonym: Myristoyl-Coa:Protein N-Myristoyltransferase 1,Typ Myristoyltransferase,Peptide N-Myristoyltransferase 1;
Ec: 2.3.1.97
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nmt1, Nmt
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Prares
symmetry Space Group: P 21 21 2
R_factor 0.213 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.918 177.285 58.298 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand 9M8, MG, MYA, PO4 enzyme Transferase E.C.2.3.1.97 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFragment-derived inhibitors of human N-myristoyltransferase block capsid assembly and replication of the common cold virus., Mousnier A, Bell AS, Swieboda DP, Morales-Sanfrutos J, Perez-Dorado I, Brannigan JA, Newman J, Ritzefeld M, Hutton JA, Guedan A, Asfor AS, Robinson SW, Hopkins-Navratilova I, Wilkinson AJ, Johnston SL, Leatherbarrow RJ, Tuthill TJ, Solari R, Tate EW, Nat Chem. 2018 May 14. pii: 10.1038/s41557-018-0039-2. doi:, 10.1038/s41557-018-0039-2. PMID:29760414
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (5o6j.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (5o6j.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5O6J
  • CSU: Contacts of Structural Units for 5O6J
  • Structure Factors (6724 Kb)
  • Retrieve 5O6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O6J from S2C, [Save to disk]
  • View 5O6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O6J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o6j_A] [5o6j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O6J
  • Community annotation for 5O6J at PDBWiki (http://pdbwiki.org)

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