5O7C Oxidoreductase date Jun 08, 2017
title 17beta-Hydroxysteroid Dehydrogenase 14 Variant T205 In Compl Non-Steroidal Quinoline Based Inhibitor
authors N.Bertoletti, F.Braun, A.Heine, G.Klebe, S.Marchais-Oberwinkler
compound source
Molecule: 17-Beta-Hydroxysteroid Dehydrogenase 14
Chain: A
Synonym: 17-Beta-Hsd 14,17-Beta-Hydroxysteroid Dehydrogenas Dehydrogenasereductase Sdr Family Member 10,Retinal Short- Dehydrogenasereductase Retsdr3,Short Chain Dehydrogenaser Family 47c Member 1;
Ec: 1.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd17b14, Dhrs10, Sdr3, Sdr47c1, Unq502pro474
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
symmetry Space Group: I 4 2 2
R_factor 0.160 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.222 91.222 131.883 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 9N2, BGC, NA, NAD enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based design and profiling of novel 17beta-HSD14 inhibitors., Braun F, Bertoletti N, Moller G, Adamski J, Frotscher M, Guragossian N, Madeira Girio PA, Le Borgne M, Ettouati L, Falson P, Muller S, Vollmer G, Heine A, Klebe G, Marchais-Oberwinkler S, Eur J Med Chem. 2018 May 22;155:61-76. doi: 10.1016/j.ejmech.2018.05.029. PMID:29859505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5o7c.pdb1.gz) 450 Kb
  • LPC: Ligand-Protein Contacts for 5O7C
  • CSU: Contacts of Structural Units for 5O7C
  • Structure Factors (252 Kb)
  • Retrieve 5O7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O7C from S2C, [Save to disk]
  • View 5O7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o7c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O7C
  • Community annotation for 5O7C at PDBWiki (http://pdbwiki.org)

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