5O7X Transcription date Jun 09, 2017
title Crystal Structure Of S. Cerevisiae Core Factor At 3.2a Resol
authors C.Engel, T.Gubbey, S.Neyer, S.Sainsbury, C.Oberthuer, C.Baejen, C. P.Cramer
compound source
Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn6;
Chain: A, D, G, J, M, P
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_taxid: 559292
Gene: Rrn6, Ybl014c, Ybl0311, Ybl0312
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn7;
Chain: B, E, H, K, N, Q
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_taxid: 559292
Gene: Rrn7, Yjl025w, J1273
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn11;
Chain: C, F, I, L, O, R
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_taxid: 559292
Gene: Rrn11, Yml043c, Ym9827.09c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor 0.254 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.070 109.140 385.640 90.02 90.01 59.98
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
F, C, L, O, R, I
  • RNA polymerase I CORE elemen...


  • M, A, J, P, D, G
  • RNA polymerase I CORE elemen...


  • N, K, E, Q, B, H


    Primary referenceStructural Basis of RNA Polymerase I Transcription Initiation., Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P, Cell. 2017 Mar 23;169(1):120-131.e22. doi: 10.1016/j.cell.2017.03.003. PMID:28340337
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2796 Kb) [Save to disk]
  • Biological Unit Coordinates (5o7x.pdb1.gz) 476 Kb
  • Biological Unit Coordinates (5o7x.pdb2.gz) 476 Kb
  • Biological Unit Coordinates (5o7x.pdb3.gz) 470 Kb
  • Biological Unit Coordinates (5o7x.pdb4.gz) 476 Kb
  • Biological Unit Coordinates (5o7x.pdb5.gz) 475 Kb
  • Biological Unit Coordinates (5o7x.pdb6.gz) 477 Kb
  • CSU: Contacts of Structural Units for 5O7X
  • Structure Factors (5583 Kb)
  • Retrieve 5O7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O7X from S2C, [Save to disk]
  • View 5O7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O7X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5o7x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o7x_H] [5o7x_A] [5o7x_K] [5o7x_Q] [5o7x_F] [5o7x_P] [5o7x_I] [5o7x_O] [5o7x_R] [5o7x_C] [5o7x_D] [5o7x_E] [5o7x_N] [5o7x_L] [5o7x_J] [5o7x_M] [5o7x_B] [5o7x_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O7X
  • Community annotation for 5O7X at PDBWiki (http://pdbwiki.org)

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