5O8Q Oxidoreductase date Jun 14, 2017
title Crystal Structure Of R. Ruber Adh-A, Mutant Y294f, W295a
authors D.Dobritzsch, D.Maurer, E.Hamnevik, T.R.Enugala, M.Widersten
compound source
Molecule: Alcohol Dehydrogenase
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
Mutation: Yes
Other_details: Contains C-Terminal His-Tag
Organism_scientific: Rhodococcus Sp. M8
Organism_taxid: 1925550
Gene: Bke56_025765
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Ai
Expression_system_plasmid: Pgt7adha-5h
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.689 109.458 256.653 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand NAD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceRelaxation of nonproductive binding and increased rate of coenzyme release in an alcohol dehydrogenase increases turnover with a non-preferred alcohol enantiomer., Hamnevik E, Enugala TR, Maurer D, Ntuku S, Oliveira A, Dobritzsch D, Widersten M, FEBS J. 2017 Sep 30. doi: 10.1111/febs.14279. PMID:28963762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (860 Kb) [Save to disk]
  • Biological Unit Coordinates (5o8q.pdb1.gz) 427 Kb
  • Biological Unit Coordinates (5o8q.pdb2.gz) 428 Kb
  • LPC: Ligand-Protein Contacts for 5O8Q
  • CSU: Contacts of Structural Units for 5O8Q
  • Structure Factors (6331 Kb)
  • Retrieve 5O8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O8Q from S2C, [Save to disk]
  • View 5O8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O8Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o8q_A] [5o8q_B] [5o8q_E] [5o8q_H] [5o8q_G] [5o8q_F] [5o8q_C] [5o8q_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O8Q
  • Community annotation for 5O8Q at PDBWiki (http://pdbwiki.org)

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