5O8V Transferase date Jun 14, 2017
title Covalent Inhibitor 4a Bound To The Lipid Pocket Of P38alpha S251c
authors M.Buehrmann, D.Rauh
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mapk 14,Cytokine Suppressive Anti-Inflammatory Dru Protein,Csbp,Map Kinase Mxi2,Max-Interacting Protein 2,Mito Activated Protein Kinase P38 Alpha,Map Kinase P38 Alpha,Str Activated Protein Kinase 2a,Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2, Sapk2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.200 74.250 77.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 9O2 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCovalent Lipid Pocket Ligands Targeting p38alpha MAPK Mutants., Rauh D, Buhrmann M, Hardick J, Weisner J, Quambusch L, Angew Chem Int Ed Engl. 2017 Aug 23. doi: 10.1002/anie.201706345. PMID:28834017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (5o8v.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 5O8V
  • CSU: Contacts of Structural Units for 5O8V
  • Structure Factors (693 Kb)
  • Retrieve 5O8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O8V from S2C, [Save to disk]
  • View 5O8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O8V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o8v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O8V
  • Community annotation for 5O8V at PDBWiki (http://pdbwiki.org)

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