5O9V Transferase date Jun 20, 2017
title Hsnmt1 In Complex With Coa And Myristoylated-Ggcfskpk Octape
authors C.Dian, T.Meinnel, C.Giglione
compound source
Molecule: Glycylpeptide N-Tetradecanoyltransferase 1
Chain: A, B
Synonym: Myristoyl-Coa:Protein N-Myristoyltransferase 1,Typ Myristoyltransferase,Peptide N-Myristoyltransferase 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nmt1, Nmt
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28 Derivative

Molecule: Apoptosis-Inducing Factor 3
Chain: C, D
Fragment: Unp Residues 2-9
Synonym: Apoptosis-Inducing Factor-Like Protein
Ec: 1.-.-.-
Engineered: Yes
Other_details: Synthetic Octapeptide Ggcfskpk Modified By N (Myr)Ggcfskpk.

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 2 21 21
R_factor 0.165 R_Free 0.206
length a length b length c angle alpha angle beta angle gamma
58.130 79.010 178.255 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructural and genomic decoding of human and plant myristoylomes reveals a definitive recognition pattern., Castrec B, Dian C, Ciccone S, Ebert CL, Bienvenut WV, Le Caer JP, Steyaert JM, Giglione C, Meinnel T, Nat Chem Biol. 2018 Jun 11. pii: 10.1038/s41589-018-0077-5. doi:, 10.1038/s41589-018-0077-5. PMID:29892081
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (5o9v.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (5o9v.pdb2.gz) 75 Kb
  • CSU: Contacts of Structural Units for 5O9V
  • Structure Factors (413 Kb)
  • Retrieve 5O9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O9V from S2C, [Save to disk]
  • View 5O9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O9V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5o9v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o9v_A] [5o9v_C] [5o9v_D] [5o9v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O9V
  • Community annotation for 5O9V at PDBWiki (http://pdbwiki.org)

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