5OCC Immune System date Jun 30, 2017
title Crystal Structure Of Cd32b (Fc Gamma Receptor Iib) In Comple Human Igg1 Fab Fragment (6g08)
authors I.Tews, C.Orr
compound source
Molecule: Low Affinity Immunoglobulin Gamma Fc Region Recep
Chain: A
Synonym: Igg Fc Receptor II-B,Cdw32,Fc-Gamma Rii-B,Fcrii-B
Engineered: Yes
Other_details: Crystal Structure Does Not Resolve Residues 36. Residue 44 Modelled As Ala Due To Lack Of Density.;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fcgr2b, Cd32, Fcg2, Igfr2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_variant: Ebna
Expression_system_cell_line: Hek293

Molecule: 6g08 Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_variant: Ebna
Expression_system_cell_line: Hek293

Molecule: 6g08 Fab Light Chain
Chain: L
Engineered: Yes
Other_details: Terminal Serine Is Not Resolved In Resolved Electron Density

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_variant: Ebna
Expression_system_cell_line: Hek293
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.230 75.020 134.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL, NAG, PO4 enzyme
Primary referenceEvaluating Anti-CD32b F(ab) Conformation Using Molecular Dynamics and Small-Angle X-Ray Scattering., Sutton EJ, Bradshaw RT, Orr CM, Frendeus B, Larsson G, Teige I, Cragg MS, Tews I, Essex JW, Biophys J. 2018 Jul 17;115(2):289-299. doi: 10.1016/j.bpj.2018.03.040. PMID:30021105
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (5occ.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 5OCC
  • CSU: Contacts of Structural Units for 5OCC
  • Structure Factors (895 Kb)
  • Retrieve 5OCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OCC from S2C, [Save to disk]
  • View 5OCC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OCC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5occ_L] [5occ_H] [5occ_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OCC
  • Community annotation for 5OCC at PDBWiki (http://pdbwiki.org)

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