OCA Atlas for 5OCD

5OCD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, G, E, H, C, F, B, I, J, D

Primary reference

Structural basis for partition of the cyclodipeptide synthases into two subfamilies., Bourgeois G, Seguin J, Babin M, Belin P, Moutiez M, Mechulam Y, Gondry M, Schmitt E, J Struct Biol. 2018 Jul;203(1):17-26. doi: 10.1016/j.jsb.2018.03.001. Epub 2018, Mar 2. PMID:29505829

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (382 Kb) [Save to disk]

Biological Unit Coordinates (5ocd.pdb1.gz) 42 Kb

Biological Unit Coordinates (5ocd.pdb2.gz) 42 Kb

Biological Unit Coordinates (5ocd.pdb3.gz) 42 Kb

Biological Unit Coordinates (5ocd.pdb4.gz) 42 Kb

Biological Unit Coordinates (5ocd.pdb5.gz) 42 Kb

Biological Unit Coordinates (5ocd.pdb6.gz) 41 Kb

Biological Unit Coordinates (5ocd.pdb7.gz) 41 Kb

Biological Unit Coordinates (5ocd.pdb8.gz) 42 Kb

Biological Unit Coordinates (5ocd.pdb9.gz) 41 Kb

CSU: Contacts of Structural Units for 5OCD

Structure Factors (1076 Kb)

Retrieve 5OCD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5OCD from S2C, [Save to disk]

View 5OCD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ocd_A] [5ocd_B] [5ocd_C] [5ocd_D] [5ocd_E] [5ocd_F] [5ocd_G] [5ocd_H] [5ocd_I] [5ocd_J]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]