5OCL date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceGeneration and Characterization of Anti-VGLUT Nanobodies Acting as Inhibitors of Transport., Schenck S, Kunz L, Sahlender D, Pardon E, Geertsma ER, Savtchouk I, Suzuki T, Neldner Y, Stefanic S, Steyaert J, Volterra A, Dutzler R, Biochemistry. 2017 Aug 1;56(30):3962-3971. doi: 10.1021/acs.biochem.7b00436. Epub, 2017 Jul 21. PMID:28731329
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]
  • Biological Unit Coordinates (5ocl.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (5ocl.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (5ocl.pdb3.gz) 80 Kb
  • Biological Unit Coordinates (5ocl.pdb4.gz) 81 Kb
  • CSU: Contacts of Structural Units for 5OCL
  • Structure Factors (627 Kb)
  • Retrieve 5OCL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OCL from S2C, [Save to disk]
  • Re-refined 5ocl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5OCL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ocl_A] [5ocl_B] [5ocl_C] [5ocl_D] [5ocl_E] [5ocl_F] [5ocl_G] [5ocl_H]
  • SWISS-PROT database:

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