5OCW Electron Transport date Jul 03, 2017
title Structure Of Mycobacterium Tuberculosis Tryptophan Synthase Group F222
authors K.Futterer, K.Abrahams, J.A.G.Cox, G.S.Besra
compound source
Molecule: Tryptophan Synthase Alpha Chain
Chain: A, C, E, G, I, K, M, O, Q, S, U, W
Ec: 4.2.1.20
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Gene: Trpa, Rv1613, Mtcy01b2.05
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Tryptophan Synthase Beta Chain
Chain: B, D, F, H, J, L, N, P, R, T, V, X
Ec: 4.2.1.20
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Gene: Trpb, Rv1612, Mtcy01b2.04
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: F 2 2 2
R_factor 0.358 R_Free 0.368
crystal
cell
length a length b length c angle alpha angle beta angle gamma
426.050 432.110 434.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.00 Å
ligand
enzyme Lyase E.C.4.2.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, T, N, V, L, J, X, P, B, H, D, R


S, K, E, Q, M, C, A, O, W, I, G, U


Primary referenceInhibiting mycobacterial tryptophan synthase by targeting the inter-subunit interface., Abrahams KA, Cox JAG, Futterer K, Rullas J, Ortega-Muro F, Loman NJ, Moynihan PJ, Perez-Herran E, Jimenez E, Esquivias J, Barros D, Ballell L, Alemparte C, Besra GS, Sci Rep. 2017 Aug 25;7(1):9430. doi: 10.1038/s41598-017-09642-y. PMID:28842600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2498 Kb) [Save to disk]
  • Biological Unit Coordinates (5ocw.pdb1.gz) 430 Kb
  • Biological Unit Coordinates (5ocw.pdb2.gz) 427 Kb
  • Biological Unit Coordinates (5ocw.pdb3.gz) 438 Kb
  • Biological Unit Coordinates (5ocw.pdb4.gz) 426 Kb
  • Biological Unit Coordinates (5ocw.pdb5.gz) 428 Kb
  • Biological Unit Coordinates (5ocw.pdb6.gz) 430 Kb
  • CSU: Contacts of Structural Units for 5OCW
  • Structure Factors (2450 Kb)
  • Retrieve 5OCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OCW from S2C, [Save to disk]
  • Re-refined 5ocw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5OCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OCW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ocw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ocw_F] [5ocw_U] [5ocw_E] [5ocw_V] [5ocw_J] [5ocw_H] [5ocw_D] [5ocw_A] [5ocw_K] [5ocw_L] [5ocw_W] [5ocw_M] [5ocw_Q] [5ocw_G] [5ocw_B] [5ocw_R] [5ocw_P] [5ocw_C] [5ocw_I] [5ocw_X] [5ocw_T] [5ocw_O] [5ocw_S] [5ocw_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OCW
  • Community annotation for 5OCW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science