5OCX Immune System date Jul 04, 2017
title Crystal Structure Of Acpa E4 In Complex With Cii-C-13-Cit
authors D.Dobritzsch, C.Ge, R.Holmdahl
compound source
Molecule: Fab Fragment Anti-Citrullinated Protein Antibody Chain;
Chain: L
Engineered: Yes
Other_details: N-Terminal Glutamine Is Posttranslationally To Pyroglutamic Acid Produced As Chimera Of Human E4 Mab Va Domains And Mouse Igg2a Constant Domains;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: B Cells
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Expi293f (Tm)
Expression_system_vector_type: Pcep4

Molecule: Fab Fragment Of Anti-Citrullinated Protein Antibo Heavy Chain;
Chain: H
Engineered: Yes
Other_details: Unmodelled Residues Not Visible In Electron Produced As Chimera Of Human Mab E4 Variable Domains And Mo Constant Domains;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: B Cells
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Expi293f (Tm)
Expression_system_vector_type: Pcep4

Molecule: Cii-C-13-Cit
Chain: A
Engineered: Yes
Other_details: Citrullinated Epitope Derived From Human Col II Biotin And Aminohexanoic Acid Attached At N-Terminus Cir Via Disulfide Bridge Formation Between The Two Cysteines Un Residues Not Visible In Electron Density Map

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.716 99.602 51.877 90.00 101.88 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand CIR, EDO, PCA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5ocx.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 5OCX
  • CSU: Contacts of Structural Units for 5OCX
  • Structure Factors (1359 Kb)
  • Retrieve 5OCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OCX from S2C, [Save to disk]
  • View 5OCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OCX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ocx_A] [5ocx_H] [5ocx_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OCX
  • Community annotation for 5OCX at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science