5ODD Transcription date Jul 05, 2017
title Human Med26 N-Terminal Domain (1-92)
authors Z.Lens, F.X.Cantrelle, R.Perruzini, F.Dewitte, X.Hanoulle, V.Vil A.Verger, I.Landrieu
compound source
Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: A
Synonym: Activator-Recruited Cofactor 70 Kda Component,Arc7 Required For Sp1 Transcriptional Activation Subunit 7,Crsp Subunit 7,Mediator Complex Subunit 26,Transcriptional Coact Crsp70;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Med26, Arc70, Crsp7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference1H, 15N and 13C assignments of the N-terminal domain of the Mediator complex subunit MED26., Peruzzini R, Lens Z, Verger A, Dewitte F, Ferreira E, Baert JL, Villeret V, Landrieu I, Cantrelle FX, Biomol NMR Assign. 2016 Apr;10(1):233-6. doi: 10.1007/s12104-016-9673-z. Epub, 2016 Feb 9. PMID:26861138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (588 Kb) [Save to disk]
  • Biological Unit Coordinates (5odd.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 5ODD
  • Original NMR restraints for 5ODD from PDB
  • Retrieve 5ODD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ODD from S2C, [Save to disk]
    • View 5ODD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ODD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5odd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ODD
  • Community annotation for 5ODD at PDBWiki (http://pdbwiki.org)

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