5OF4 Transcription date Jul 10, 2017
title The Cryo-Em Structure Of Human Tfiih
authors B.J.Greber, T.H.D.Nguyen, J.Fang, P.V.Afonine, P.D.Adams, E.Nogal
compound source
Molecule: Tfiih Basal Transcription Factor Complex Helicase Subunit,Xpb,Tfiih Basal Transcription Factor Complex Helica Subunit;
Chain: A
Synonym: Basic Transcription Factor 2 89 Kda Subunit,Btf2 P Excision Repair Protein Ercc-3,Dna Repair Protein Complemen Cells,Tfiih Basal Transcription Factor Complex 89 Kda Subun P89,Xeroderma Pigmentosum Group B-Complementing Protein,Bas Transcription Factor 2 89 Kda Subunit,Btf2 P89,Dna Excision Protein Ercc-3,Dna Repair Protein Complementing Xp-B Cells, Basal Transcription Factor Complex 89 Kda Subunit,Tfiih P89 Pigmentosum Group B-Complementing Protein;
Ec: 3.6.4.12,3.6.4.12
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Tfiih Basal Transcription Factor Complex Helicase Subunit;
Chain: B
Synonym: Basic Transcription Factor 2 80 Kda Subunit,Btf2 P Dna Excision Repair Protein Ercc-2,Dna Repair Protein Compl Xp-D Cells,Tfiih Basal Transcription Factor Complex 80 Kda Tfiih P80,Xeroderma Pigmentosum Group D-Complementing Prote
Ec: 3.6.4.12
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 4,P52,Ge Transcription Factor Iih Subunit 4;
Chain: D
Synonym: Basic Transcription Factor 2 52 Kda Subunit,Btf2 P Transcription Factor Iih Polypeptide 4,Tfiih Basal Transcri Factor Complex P52 Subunit,Basic Transcription Factor 2 52 Subunit,Btf2 P52,General Transcription Factor Iih Polypepti Basal Transcription Factor Complex P52 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 2
Chain: E
Synonym: Basic Transcription Factor 2 44 Kda Subunit,Btf2 P Transcription Factor Iih Polypeptide 2,Tfiih Basal Transcri Factor Complex P44 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 3
Chain: F
Synonym: Basic Transcription Factor 2 34 Kda Subunit,Btf2 P Transcription Factor Iih Polypeptide 3,Tfiih Basal Transcri Factor Complex P34 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 5
Chain: G
Synonym: General Transcription Factor Iih Polypeptide 5,Tfb Ortholog,Tfiih Basal Transcription Factor Complex Ttd-A Sub
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Mat1
Chain: H
Other_details: Sequence Register Unassigned.
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Unassigned Secondary Structure Elements.
Chain: Z
Other_details: Sequence Unassigned.
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Unassigned Secondary Structure Elements (P52 Regi
Chain: Y
Other_details: Sequence Unassigned
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Unassigned Secondary Structure Elements (Xpb Nte
Chain: X
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand SF4 enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


D


E


F


G


Primary referenceThe cryo-electron microscopy structure of human transcription factor IIH., Greber BJ, Nguyen THD, Fang J, Afonine PV, Adams PD, Nogales E, Nature. 2017 Sep 21;549(7672):414-417. doi: 10.1038/nature23903. Epub 2017 Sep, 13. PMID:28902838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (5of4.pdb1.gz) 348 Kb
  • LPC: Ligand-Protein Contacts for 5OF4
  • CSU: Contacts of Structural Units for 5OF4
  • Retrieve 5OF4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OF4 from S2C, [Save to disk]
    • View 5OF4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OF4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5of4_E] [5of4_X] [5of4_D] [5of4_Y] [5of4_G] [5of4_A] [5of4_Z] [5of4_B] [5of4_F] [5of4_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OF4
  • Community annotation for 5OF4 at PDBWiki (http://pdbwiki.org)

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