5OFM Oxidoreductase date Jul 11, 2017
title Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase With 5-Amino-1-Methyl-1h-Indole
authors J.E.Unterlass, A.Basle, T.J.Blackburn, J.Tucker, C.Cano, M.E.M.No N.J.Curtin
compound source
Molecule: D-3-Phosphoglycerate Dehydrogenase
Chain: B, A
Synonym: 3-Pgdh,2-Oxoglutarate Reductase,Malate Dehydrogena
Ec: 1.1.1.95,1.1.1.399,1.1.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phgdh, Pgdh3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.191 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.342 45.860 56.175 97.91 110.74 106.39
method X-Ray Diffractionresolution 1.50 Å
ligand 9TT enzyme Oxidoreductase E.C.1.1.1.95 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5ofm.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 5OFM
  • CSU: Contacts of Structural Units for 5OFM
  • Structure Factors (1566 Kb)
  • Retrieve 5OFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OFM from S2C, [Save to disk]
  • View 5OFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OFM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ofm_A] [5ofm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OFM
  • Community annotation for 5OFM at PDBWiki (http://pdbwiki.org)

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