5OHN Hydrolase date Jul 17, 2017
title Crystal Structure Of Usp30 In Covalent Complex With Ubiquiti Propargylamide (Low Resolution)
authors M.Gersch, D.Komander
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 30,Ubiquiti Carboxyl-Terminal Hydrolase 30;
Chain: A, C
Fragment: Unp Residues 64-360,Unp Residues 432-502
Synonym: Deubiquitinating Enzyme 30,Ubiquitin Thioesterase Ubiquitin-Specific-Processing Protease 30,Ub-Specific Prote Deubiquitinating Enzyme 30,Ubiquitin Thioesterase 30,Ubiqui Specific-Processing Protease 30,Ub-Specific Protease 30;
Ec: 3.4.19.12,3.4.19.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp30
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta 2 Placi
Expression_system_vector_type: Plasmid
Expression_system_vector: Popin-3c-K
Expression_system_plasmid: Mg-26-21

Molecule: Polyubiquitin-B
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta 2 Placi
Expression_system_vector_type: Plasmid
Expression_system_vector: Ptxb1
symmetry Space Group: P 65
R_factor 0.211 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.834 181.834 94.957 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.60 Å
ligand AYE, ZN enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceMechanism and regulation of the Lys6-selective deubiquitinase USP30., Gersch M, Gladkova C, Schubert AF, Michel MA, Maslen S, Komander D, Nat Struct Mol Biol. 2017 Sep 25. doi: 10.1038/nsmb.3475. PMID:28945249
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (5ohn.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (5ohn.pdb2.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5OHN
  • CSU: Contacts of Structural Units for 5OHN
  • Structure Factors (882 Kb)
  • Retrieve 5OHN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OHN from S2C, [Save to disk]
  • View 5OHN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OHN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ohn_A] [5ohn_D] [5ohn_B] [5ohn_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OHN
  • Community annotation for 5OHN at PDBWiki (http://pdbwiki.org)

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