5OKD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 6PE, 9XE, CDL, FES, HEC, HEM, LMT, PEE, PG4, PO4, PX4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


Primary referenceX-ray and cryo-EM structures of inhibitor-bound cytochrome bc1 complexes for structure-based drug discovery., Amporndanai K, Johnson RM, O'Neill PM, Fishwick CWG, Jamson AH, Rawson S, Muench SP, Hasnain SS, Antonyuk SV, IUCrJ. 2018 Feb 20;5(Pt 2):200-210. doi: 10.1107/S2052252518001616. eCollection, 2018 Mar 1. PMID:29765610
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (699 Kb) [Save to disk]
  • Biological Unit Coordinates (5okd.pdb1.gz) 685 Kb
  • LPC: Ligand-Protein Contacts for 5OKD
  • CSU: Contacts of Structural Units for 5OKD
  • Structure Factors (2438 Kb)
  • Retrieve 5OKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OKD from S2C, [Save to disk]
  • View 5OKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5okd_A] [5okd_B] [5okd_C] [5okd_D] [5okd_E] [5okd_F] [5okd_G] [5okd_H] [5okd_I] [5okd_J]
  • SWISS-PROT database:

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