5OLM Antiviral Protein date Jul 28, 2017
title Trim21
authors L.C.James
compound source
Molecule: E3 Ubiquitin-Protein Ligase Trim21
Chain: A, B
Synonym: 52 Kda Ro Protein,52 Kda Ribonucleoprotein Autoant Ross-A,Ring Finger Protein 81,Ring-Type E3 Ubiquitin Trans Trim21,Ro(Ss-A),Sjoegren Syndrome Type A Antigen,Ss-A,Tripa Motif-Containing Protein 21;
Ec: 2.3.2.27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim21, Rnf81, Ro52, Ssa1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 21 21
R_factor 0.208 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.400 83.260 117.588 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand ZN enzyme Transferase E.C.2.3.2.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIntracellular antibody signalling is regulated by phosphorylation of the Fc receptor TRIM21., Dickson C, Fletcher AJ, Vaysburd M, Yang JC, Mallery DL, Zeng J, Johnson CM, McLaughlin SH, Skehel M, Maslen S, Cruickshank J, Huguenin-Dezot N, Chin JW, Neuhaus D, James LC, Elife. 2018 Apr 18;7. pii: 32660. doi: 10.7554/eLife.32660. PMID:29667579
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5olm.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 5OLM
  • CSU: Contacts of Structural Units for 5OLM
  • Structure Factors (560 Kb)
  • Retrieve 5OLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OLM from S2C, [Save to disk]
  • View 5OLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OLM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5olm_B] [5olm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OLM
  • Community annotation for 5OLM at PDBWiki (http://pdbwiki.org)

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