5OND Transcription date Aug 03, 2017
title Rfah From Escherichia Coli In Complex With Ops Dna
authors P.K.Zuber, I.Artsimovitch, P.Roesch, S.H.Knauer
compound source
Molecule: Transcription Antitermination Protein Rfah
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rfah, Hlyt, Sfrb, B3842, Jw3818
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Gpcpgpgptpapgptpc)-3')
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor 0.187 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.310 43.190 61.860 80.45 75.48 75.39
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand., Zuber PK, Artsimovitch I, NandyMazumdar M, Liu Z, Nedialkov Y, Schweimer K, Rosch P, Knauer SH, Elife. 2018 May 9;7. pii: 36349. doi: 10.7554/eLife.36349. PMID:29741479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5ond.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (5ond.pdb2.gz) 50 Kb
  • CSU: Contacts of Structural Units for 5OND
  • Structure Factors (157 Kb)
  • Retrieve 5OND in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OND from S2C, [Save to disk]
  • View 5OND in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OND
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ond from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ond_C] [5ond_B] [5ond_A] [5ond_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OND
  • Community annotation for 5OND at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science