5ONS Translation date Aug 04, 2017
title Crystal Structure Of The Minimal Denr-Mcts1 Complex
authors Y.L.Ahmed, I.Sinning
compound source
Molecule: Malignant T-Cell-Amplified Sequence 1
Chain: A
Synonym: Mct-1,Multiple Copies T-Cell Malignancies
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcts1, Mct1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Density-Regulated Protein
Chain: B
Synonym: Drp,Protein Drp1,Smooth Muscle Cell-Associated Pro Smap-3;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Denr, Drp1, H14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 41 2 2
R_factor 0.200 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.030 49.030 207.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDENR-MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation., Ahmed YL, Schleich S, Bohlen J, Mandel N, Simon B, Sinning I, Teleman AA, PLoS Biol. 2018 Jun 11;16(6):e2005160. doi: 10.1371/journal.pbio.2005160. PMID:29889857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5ons.pdb1.gz) 73 Kb
  • CSU: Contacts of Structural Units for 5ONS
  • Structure Factors (422 Kb)
  • Retrieve 5ONS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ONS from S2C, [Save to disk]
  • View 5ONS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ONS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ons from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ons_B] [5ons_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ONS
  • Community annotation for 5ONS at PDBWiki (http://pdbwiki.org)

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