5ONW	Dna Binding Protein	date	Aug 04, 2017
title	X-Ray Crystal Structure Of A Nucleosome Core Particle With I Site-Specifically Crosslinked To The Histone Octamer And Th H2ah2b Dimers Crosslinked Via H2a N38c
authors	T.D.Frouws, P.D.Barth, T.J.Richmond
compound		source
Molecule: Dna (147-Mer) Chain: I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh10b Expression_system_plasmid: Puc57
Molecule: Dna (147-Mer) Chain: J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh10b Expression_system_plasmid: Puc57
Molecule: Histone H3.2 Chain: A, E Engineered: Yes Mutation: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
Molecule: Histone H2a Chain: C, G Engineered: Yes Mutation: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Pet3a
symmetry	Space Group: P 21 21 21	R_factor 0.208 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.560 183.830 109.490 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	CL, G47, MN	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability., Frouws TD, Barth PD, Richmond TJ, J Mol Biol. 2017 Nov 4. pii: S0022-2836(17)30522-3. doi:, 10.1016/j.jmb.2017.10.029. PMID:29113904

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (515 Kb) [Save to disk] Biological Unit Coordinates (5onw.pdb1.gz) 501 Kb LPC: Ligand-Protein Contacts for 5ONW CSU: Contacts of Structural Units for 5ONW Structure Factors (415 Kb) Retrieve 5ONW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ONW from S2C, [Save to disk]

View 5ONW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ONW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5onw_B] [5onw_G] [5onw_D] [5onw_A] [5onw_J] [5onw_I] [5onw_C] [5onw_E] [5onw_F] [5onw_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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