5OOH Oxidoreductase date Aug 07, 2017
title Human Biliverdin Ix Beta Reductase: Nadperythrosin Extra Bl Ternary Complex
authors J.A.Manso, P.J.B.Pereira
compound source
Molecule: Flavin Reductase (Nadph)
Chain: A
Synonym: Fr,Biliverdin Reductase B,Bvr-B,Biliverdin-Ix Beta Reductase,Green Heme-Binding Protein,Ghbp,Nadph-Dependent D Nadph-Flavin Reductase,Flr;
Ec: 1.5.1.30,1.3.1.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Blvrb, Flr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.122 R_Free 0.147
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.263 40.259 107.231 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand 9ZZ, GOL, NAP enzyme Oxidoreductase E.C.1.5.1.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIn silico and crystallographic studies identify key structural features of biliverdin IXbeta reductase inhibitors having nanomolar potency., Nesbitt NM, Zheng X, Li Z, Manso JA, Yen WY, Malone LE, Ripoll-Rozada J, Pereira PJB, Mantle TJ, Wang J, Bahou WF, J Biol Chem. 2018 Feb 27. pii: RA118.001803. doi: 10.1074/jbc.RA118.001803. PMID:29487133
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (5ooh.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 5OOH
  • CSU: Contacts of Structural Units for 5OOH
  • Structure Factors (2649 Kb)
  • Retrieve 5OOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OOH from S2C, [Save to disk]
  • View 5OOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OOH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ooh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OOH
  • Community annotation for 5OOH at PDBWiki (http://pdbwiki.org)

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