5OOI Transferase date Aug 07, 2017
title Structure Of Protein Kinase Ck2 Catalytic Subunit (Isoform C In Complex With The Indenoindole-Type Inhibitor 4p
authors J.Hochscherf, D.Lindenblatt, B.Witulski, R.Birus, D.Aichele, C.Ma Z.Bouaziz, M.Le Borgne, J.Jose, K.Niefind
compound source
Molecule: Casein Kinase II Subunit Alpha'
Chain: A, B
Synonym: Ck II Alpha'
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a2, Ck2a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.488 112.128 143.692 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 9YE, ACT, EDO, NA enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceUnexpected Binding Mode of a Potent Indeno[1,2-b]indole-Type Inhibitor of Protein Kinase CK2 Revealed by Complex Structures with the Catalytic Subunit CK2alpha and Its Paralog CK2alpha'., Hochscherf J, Lindenblatt D, Witulski B, Birus R, Aichele D, Marminon C, Bouaziz Z, Le Borgne M, Jose J, Niefind K, Pharmaceuticals (Basel). 2017 Dec 13;10(4). pii: ph10040098. doi:, 10.3390/ph10040098. PMID:29236079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (5ooi.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (5ooi.pdb2.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 5OOI
  • CSU: Contacts of Structural Units for 5OOI
  • Structure Factors (407 Kb)
  • Retrieve 5OOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OOI from S2C, [Save to disk]
  • View 5OOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OOI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ooi_B] [5ooi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OOI
  • Community annotation for 5OOI at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science