5OPA Oxidoreductase date Aug 09, 2017
title The Crystal Structure Of P450 Cyp121 In Complex With Lead Co
authors C.W.Levy
compound source
Molecule: Mycocyclosin Synthase
Chain: A
Synonym: Cytochrome P450 121,Cytochrome P450 Mt2
Ec: 1.14.21.9
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Cdc Oshkosh);
Organism_taxid: 83331
Gene: Cyp121, Mt2336
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet11a
symmetry Space Group: P 65 2 2
R_factor 0.130 R_Free 0.157
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.887 77.887 263.547 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.35 Å
ligand A2W, HEM, PEG, SO4 enzyme Oxidoreductase E.C.1.14.21.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel Aryl Substituted Pyrazoles as Small Molecule Inhibitors of Cytochrome P450 CYP121A1: Synthesis and Antimycobacterial Evaluation., Taban IM, Elshihawy HEAE, Torun B, Zucchini B, Williamson CJ, Altuwairigi D, Ngu AST, McLean KJ, Levy CW, Sood S, Marino LB, Munro AW, de Carvalho LPS, Simons C, J Med Chem. 2017 Dec 28;60(24):10257-10267. doi: 10.1021/acs.jmedchem.7b01562., Epub 2017 Dec 7. PMID:29185746
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5opa.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 5OPA
  • CSU: Contacts of Structural Units for 5OPA
  • Structure Factors (2239 Kb)
  • Retrieve 5OPA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OPA from S2C, [Save to disk]
  • View 5OPA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OPA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5opa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OPA
  • Community annotation for 5OPA at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science