5OPP	Hydrolase	date	Aug 10, 2017
title	Crystal Structure Of S408r Cn-II Mutant
authors	A.Hnizda, P.Pachl, P.Rezacova
compound		source
Molecule: Cytosolic Purine 5'-Nucleotidase Chain: A Synonym: Cytosolic 5'-Nucleotidase II,Cn-II Ec: 3.1.3.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nt5c2, Nt5b, Nt5cp, Pnt5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Pet28
symmetry	Space Group: I 2 2 2	R_factor 0.191 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.668 127.025 130.462 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	BR, GOL, MG	enzyme	Hydrolase E.C.3.1.3.5 BRENDA
Primary reference	Relapsed acute lymphoblastic leukemia-specific mutations in NT5C2 cluster into hotspots driving intersubunit stimulation., Hnizda A, Fabry M, Moriyama T, Pachl P, Kugler M, Brinsa V, Ascher DB, Carroll WL, Novak P, Zaliova M, Trka J, Rezacova P, Yang JJ, Veverka V, Leukemia. 2018 Jun;32(6):1393-1403. doi: 10.1038/s41375-018-0073-5. Epub 2018 Feb, 25. PMID:29535428

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk] Biological Unit Coordinates (5opp.pdb1.gz) 653 Kb LPC: Ligand-Protein Contacts for 5OPP CSU: Contacts of Structural Units for 5OPP Structure Factors (2271 Kb) Retrieve 5OPP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5OPP from S2C, [Save to disk]

View 5OPP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5OPP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5opp_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5OPP

Community annotation for 5OPP at PDBWiki (http://pdbwiki.org)

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