5OPT Ribosome date Aug 10, 2017
title Structure Of Ksrp In Context Of Trypanosoma Cruzi 40s
authors J.Brito Querido, E.Mancera-Martinez, Q.Vicens, A.Bochler, J.Chic A.Simonetti, Y.Hashem
compound source
Molecule: Activated Protein Kinase C Receptor, Putative
Chain: p
Engineered: Yes
 Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053511211.120, Tc00.1047053511211.130
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: Ribosomal Protein S29, Putative
Chain: q
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053506025.14, Tc00.1047053511209.54, Tc00.1047053511805.15;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S16, Putative
Chain: r
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053503899.20, Tc00.1047053503899.30
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S15, Putative
Chain: t
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053511809.130, Tc00.1047053511809.99, Tc00.1047053511811.10;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S18, Putative
Chain: u
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053506679.100, Tc00.1047053506679.94
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S4
Chain: L
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053509683.117, Tc00.1047053511051.39, Tc00.1047053511051.50;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S23, Putative
Chain: M
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053504181.20, Tc00.1047053504181.30, Tc00.1047053509695.180, Tc00.1047053509695.184;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S5, Putative
Chain: O
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053506297.150, Tc00.1047053506297.160
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: Ribosomal Protein S7, Putative
Chain: Q
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053506593.30
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S13, Putative
Chain: R
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053511291.90
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S27, Putative
Chain: S
Synonym: Ribosomal Protein S27,Putative
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053506963.14, Tc00.1047053511233.14, Tc00.1047053511277.175;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S26
Chain: T
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053503801.20, Tc00.1047053508817.60
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S33, Putative
Chain: U
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053511237.60
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S14, Putative
Chain: V
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053409117.20, Tc00.1047053506945.230, Tc00.1047053508823.50;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S3a-2
Chain: W
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053511001.9, Tc00.1047053511001.18
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S11, Putative
Chain: X
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053508319.70, Tc00.1047053508405.40
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S24
Chain: Y
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053507681.150, Tc00.1047053507681.160
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S8
Chain: Z
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053511903.110
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S9, Putative
Chain: b
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053504163.30, Tc00.1047053506401.120
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein Sa
Chain: f
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053510425.19
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S2, Putative
Chain: d
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053503833.40, Tc00.1047053506213.60, Tc00.1047053511287.120, Tc00.1047053511287.40;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S15a, Putative
Chain: e
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053506297.330
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S21, Putative
Chain: g
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053510101.420
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: Ribosomal Protein S25, Putative
Chain: a
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053504105.94, Tc00.1047053509233.190
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S12
Chain: I
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053503395.50, Tc00.1047053506181.59
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: Ubiquitinribosomal Protein S27a, Putative
Chain: j
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053510409.39
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S6
Chain: P
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053510769.49
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S17, Putative
Chain: k
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053508827.70
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: Ribosomal Protein S20, Putative
Chain: l
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053508475.10, Tc00.1047053508823.120, Tc00.1047053508823.140;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S3, Putative
Chain: m
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053504021.109, Tc00.1047053507677.39, Tc00.1047053509353.30;
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S10, Putative
Chain: n
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053506679.140, Tc00.1047053506679.150
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: Ribosomal Protein S19, Putative
Chain: o
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053510879.20
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 40s Ribosomal Protein S30
Chain: c
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053507019.83, Tc00.1047053507019.86
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: Rna-Binding Protein, Putative
Chain: h
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053511727.270
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693

Molecule: 18s Rrna
Chain: E
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi
Organism_taxid: 353153
Expression_system: Trypanosoma Cruzi
Expression_system_taxid: 5693
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
Gene
Ontology
ChainFunctionProcessComponent
L


M


O


P


Q


R


S


T


U


V


W


X


Y


Z


a, n


b


c


d


e


f


g


h


i


j


k


l


m


o


p


q


r


t


u


Primary referenceThe cryo-EM Structure of a Novel 40S Kinetoplastid-Specific Ribosomal Protein., Brito Querido J, Mancera-Martinez E, Vicens Q, Bochler A, Chicher J, Simonetti A, Hashem Y, Structure. 2017 Oct 13. pii: S0969-2126(17)30305-2. doi:, 10.1016/j.str.2017.09.014. PMID:29107485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1408 Kb) [Save to disk]
  • Biological Unit Coordinates (5opt.pdb1.gz) 1393 Kb
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  • View one-letter amino acid or nucleotide sequence for each chain: [5opt_c] [5opt_X] [5opt_Y] [5opt_T] [5opt_o] [5opt_e] [5opt_a] [5opt_S] [5opt_i] [5opt_M] [5opt_j] [5opt_b] [5opt_V] [5opt_f] [5opt_h] [5opt_k] [5opt_W] [5opt_Z] [5opt_r] [5opt_t] [5opt_E] [5opt_R] [5opt_Q] [5opt_d] [5opt_l] [5opt_u] [5opt_n] [5opt_U] [5opt_g] [5opt_L] [5opt_O] [5opt_P] [5opt_p] [5opt_m] [5opt_q]
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