5OPX Chaperone date Aug 10, 2017
title Crystal Structure Of The Groel Mutant A109c In Complex With Adp Bef2
authors X.Yan, Q.Shi, A.Bracher, G.Milicic, A.K.Singh, F.U.Hartl, M.Hayer-
compound source
Molecule: 60 Kda Chaperonin
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Fragment: Groel
Synonym: Groel Protein,Protein Cpn60
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Grol, Groel, Mopa, B4143, Jw4103
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid

Molecule: 10 Kda Chaperonin
Chain: 1, 2, O, P, Q, R, S, T, U, V, W, X, Y, Z
Synonym: Groes Protein,Protein Cpn10
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Gene: Gros, Groes, Mopb, B4142, Jw4102
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.231 R_Free 0.256
length a length b length c angle alpha angle beta angle gamma
217.567 230.504 235.391 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.64 Å
ligand ADP, BEF, K, MG enzyme
F, N, K, E, M, C, L, A, J, B, H, D, I, G

S, T, Y, 2, V, Z, Q, 1, O, W, X, P, R, U

Primary referenceGroEL Ring Separation and Exchange in the Chaperonin Reaction., Yan X, Shi Q, Bracher A, Milicic G, Singh AK, Hartl FU, Hayer-Hartl M, Cell. 2017 Dec 26. pii: S0092-8674(17)31490-3. doi: 10.1016/j.cell.2017.12.010. PMID:29336887
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2724 Kb) [Save to disk]
  • Biological Unit Coordinates (5opx.pdb1.gz) 2697 Kb
  • LPC: Ligand-Protein Contacts for 5OPX
  • CSU: Contacts of Structural Units for 5OPX
  • Structure Factors (4095 Kb)
  • Retrieve 5OPX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OPX from S2C, [Save to disk]
  • View 5OPX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OPX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5opx_F] [5opx_T] [5opx_A] [5opx_K] [5opx_U] [5opx_N] [5opx_W] [5opx_H] [5opx_Z] [5opx_I] [5opx_1] [5opx_O] [5opx_Y] [5opx_C] [5opx_R] [5opx_X] [5opx_G] [5opx_M] [5opx_E] [5opx_Q] [5opx_L] [5opx_2] [5opx_D] [5opx_S] [5opx_J] [5opx_V] [5opx_P] [5opx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OPX
  • Community annotation for 5OPX at PDBWiki (http://pdbwiki.org)

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