5OQM Transcription date Aug 13, 2017
title Structure Of Yeast Transcription Pre-Initiation Complex With Core Mediator
authors S.Schilbach, M.Hantsche, D.Tegunov, C.Dienemann, C.Wigge, H.Urlau P.Cramer
compound source
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb1
Chain: A
Synonym: Rna Polymerase II Subunit B1,Dna-Directed Rna Poly Largest Subunit,Rna Polymerase II Subunit B220;
Ec: 2.7.7.6
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb2
Chain: B
Synonym: Rna Polymerase II Subunit 2,B150,Dna-Directed Rna II 140 Kda Polypeptide;
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb3
Chain: C
Synonym: Rna Polymerase II Subunit B3,B44.5,Dna-Directed Rn Polymerase II 45 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb4
Chain: D
Synonym: Rna Polymerase II Subunit B4,B32,Dna-Directed Rna II 32 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: E
Synonym: Rna Polymerases I,II,And III Subunit Abc1,Abc27,Dn Rna Polymerases I,And III 27 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: F
Synonym: Rna Polymerases I,II,And III Subunit Abc2,Abc23,Dn Rna Polymerases I,And III 23 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb7
Chain: G
Synonym: Rna Polymerase II Subunit B7,B16

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: H
Synonym: Rna Polymerases I,II,And III Subunit Abc3,Abc14.4, Dna-Directed Rna Polymerases I,And III 14.5 Kda Polypeptide

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb9
Chain: I
Synonym: Rna Polymerase II Subunit B9,B12.6,Dna-Directed Rn Polymerase II 14.2 Kda Polypeptide,Dna-Directed Rna Polymer Subunit 9;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: J
Synonym: Rna Polymerases I,II,And III Subunit Abc5,Abc10-Be Dna-Directed Rna Polymerases I,And III 8.3 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb11
Chain: K
Synonym: Rna Polymerase II Subunit B11,B13.6,Dna-Directed R Polymerase II 13.6 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: L
Synonym: Rna Polymerases I,II,And III Subunit Abc4,Abc10-Al

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Transcription Initiation Factor Iib
Chain: M
Synonym: General Transcription Factor Tfiib,Transcription F
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Sua7, Ypr086w, P9513.4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Nontemplate Dna
Chain: N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Tata-Box-Binding Protein
Chain: O
Synonym: Tata Sequence-Binding Protein,Tbp,Tata-Binding Fac Box Factor,Transcription Factor D,Transcription Initiation Tfiid Tbp Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Spt15, Btf1, Tbp1, Yer148w
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Initiation Factor Iif Subunit Alpha
Chain: Q
Synonym: Tfiif-Alpha,Tfiif Large Subunit,Transcription Fact Kda Subunit,P105;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae;
Organism_common: Baker'S Yeast
Organism_taxid: 559292, 4932
Strain: Atcc 204508 S288c
Gene: Tfg1, Ssu71, Ygr186w, G7526, Tfg1, Sckg_1591
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Initiation Factor Iif Subunit Beta
Chain: R
Synonym: Atp-Dependent Helicase Tfg2,Tfiif Medium Subunit,T Transcription Factor G 54 Kda Subunit;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Tfg2, Ygr005c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Template Dna
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Transcription Initiation Factor Iia Large Subunit
Chain: U
Synonym: Tfiia Large Subunit,Tfiia 32 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Toa1, Yor194c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Initiation Factor Iia Subunit 2
Chain: V
Synonym: General Transcription Factor Iia Subunit 2,Tfiia 1 Subunit,Transcription Initiation Factor Iia Small Chain,Tra Initiation Factor Iia Small Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Toa2, Ykl058w
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Factor Tfiie Subunit
Chain: W
Synonym: Tfiie-Alpha,Factor A 66 Kda Subunit,Transcription Large Subunit,Tfiie-Alpha,Factor A 66 Kda Subunit,Transcrip Factor A Large Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae, Saccharomyce Cerevisiae (Strain Atcc 204508 S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 4932, 559292
Strain: Atcc 204508 S288c
Gene: Tfa1, Sckg_3819, Tfa1, Ykl028w
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Initiation Factor Iie Subunit Beta
Chain: X
Synonym: Tfiie-Beta,Factor A 43 Kda Subunit,Transcription F Small Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Tfa2, Ykr062w
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: General Transcription And Dna Repair Factor Iih H Subunit Xpd;
Chain
Synonym: Tfiih Subunit Xpd,Dna Repair Helicase Rad3,Rna Pol Transcription Factor B Subunit Rad3,Tfb Subunit Rad3,Tfiih Xpd,Dna Repair Helicase Rad3,Rna Polymerase II Transcriptio Subunit Rad3,Tfb Subunit Rad3,Tfiih Subunit Xpd,Dna Repair Rad3,Rna Polymerase II Transcription Factor B Subunit Rad3, Subunit Rad3;
Ec: 3.6.4.12,3.6.4.12,3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae;
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Rad3, Rem1, Yer171w
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: General Transcription And Dna Repair Factor Iih S Tfb1;
Chain: 1
Synonym: Tfiih Subunit Tfb1,Rna Polymerase II Transcription 73 Kda Subunit,Rna Polymerase II Transcription Factor B P73 Rna Polymerase II Transcription Factor B Subunit 1,Tfiih Su Tfb1,Rna Polymerase II Transcription Factor B 73 Kda Subuni Polymerase II Transcription Factor B P73 Subunit,Rna Polyme Transcription Factor B Subunit 1,Tfiih Subunit Tfb1,Rna Pol Transcription Factor B 73 Kda Subunit,Rna Polymerase II Tra Factor B P73 Subunit,Rna Polymerase II Transcription Factor 1,Tfiih Subunit Tfb1,Rna Polymerase II Transcription Factor Subunit,Rna Polymerase II Transcription Factor B P73 Subuni Polymerase II Transcription Factor B Subunit 1,Tfiih Subuni Polymerase II Transcription Factor B 73 Kda Subunit,Rna Pol Transcription Factor B P73 Subunit,Rna Polymerase II Transc Factor B Subunit 1,Tfiih Subunit Tfb1,Rna Polymerase II Tra Factor B 73 Kda Subunit,Rna Polymerase II Transcription Fac Subunit,Rna Polymerase II Transcription Factor B Subunit 1, Subunit Tfb1,Rna Polymerase II Transcription Factor B 73 Kd Rna Polymerase II Transcription Factor B P73 Subunit,Rna Po II Transcription Factor B Subunit 1;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae;
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Tfb1, Ydr311w, D9740.3
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: General Transcription And Dna Repair Factor Iih S Tfb2;
Chain: 2
Synonym: Tfiih Subunit Tfb2,Rna Polymerase II Transcription 52 Kda Subunit,Rna Polymerase II Transcription Factor B P52 Rna Polymerase II Transcription Factor B Subunit 2,Tfiih Su Tfb2,Rna Polymerase II Transcription Factor B 52 Kda Subuni Polymerase II Transcription Factor B P52 Subunit,Rna Polyme Transcription Factor B Subunit 2,Tfiih Subunit Tfb2,Rna Pol Transcription Factor B 52 Kda Subunit,Rna Polymerase II Tra Factor B P52 Subunit,Rna Polymerase II Transcription Factor 2,Tfiih Subunit Tfb2,Rna Polymerase II Transcription Factor Subunit,Rna Polymerase II Transcription Factor B P52 Subuni Polymerase II Transcription Factor B Subunit 2,Tfiih Subuni Polymerase II Transcription Factor B 52 Kda Subunit,Rna Pol Transcription Factor B P52 Subunit,Rna Polymerase II Transc Factor B Subunit 2,Tfiih Subunit Tfb2,Rna Polymerase II Tra Factor B 52 Kda Subunit,Rna Polymerase II Transcription Fac Subunit,Rna Polymerase II Transcription Factor B Subunit 2, Subunit Tfb2,Rna Polymerase II Transcription Factor B 52 Kd Rna Polymerase II Transcription Factor B P52 Subunit,Rna Po II Transcription Factor B Subunit 2;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae;
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Tfb2, Ypl122c
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Rna Polymerase II Transcription Factor B Subunit
Chain: 3
Synonym: Rna Polymerase II Transcription Factor B 38 Kda Su Polymerase II Transcription Factor B P38 Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Tfb3, Rig2, Ydr460w
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: General Transcription And Dna Repair Factor Iih S Tfb4;
Chain: 4
Synonym: Tfiih Subunit Tfb4,Rna Polymerase II Transcription 34 Kda Subunit,Rna Polymerase II Transcription Factor B P34 Rna Polymerase II Transcription Factor B Subunit 4,Tfiih Su Tfb4,Rna Polymerase II Transcription Factor B 34 Kda Subuni Polymerase II Transcription Factor B P34 Subunit,Rna Polyme Transcription Factor B Subunit 4,Tfiih Subunit Tfb4,Rna Pol Transcription Factor B 34 Kda Subunit,Rna Polymerase II Tra Factor B P34 Subunit,Rna Polymerase II Transcription Factor 4,Tfiih Subunit Tfb4,Rna Polymerase II Transcription Factor Subunit,Rna Polymerase II Transcription Factor B P34 Subuni Polymerase II Transcription Factor B Subunit 4,Tfiih Subuni Polymerase II Transcription Factor B 34 Kda Subunit,Rna Pol Transcription Factor B P34 Subunit,Rna Polymerase II Transc Factor B Subunit 4;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae;
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Tfb4, Ypr056w
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: General Transcription And Dna Repair Factor Iih S Tfb5;
Chain: 5
Synonym: Tfiih Subunit Tfb5,Rna Polymerase II Transcription Subunit 5;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Tfb5, Ydr079c-A
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: General Transcription And Dna Repair Factor Iih S Ssl1;
Chain: 6
Synonym: Tfiih Subunit Ssl1,Rna Polymerase II Transcription Subunit Ssl1,Tfb Subunit Ssl1,Suppressor Of Stem-Loop Prote Subunit Ssl1,Rna Polymerase II Transcription Factor B Subun Tfb Subunit Ssl1,Suppressor Of Stem-Loop Protein 1,Tfiih Su Ssl1,Rna Polymerase II Transcription Factor B Subunit Ssl1, Subunit Ssl1,Suppressor Of Stem-Loop Protein 1,Tfiih Subuni Polymerase II Transcription Factor B Subunit Ssl1,Tfb Subun Suppressor Of Stem-Loop Protein 1,Tfiih Subunit Ssl1,Rna Po II Transcription Factor B Subunit Ssl1,Tfb Subunit Ssl1,Sup Stem-Loop Protein 1,Tfiih Subunit Ssl1,Rna Polymerase II Transcription Factor B Subunit Ssl1,Tfb Subunit Ssl1,Suppre Stem-Loop Protein 1,Tfiih Subunit Ssl1,Rna Polymerase II Transcription Factor B Subunit Ssl1,Tfb Subunit Ssl1,Suppre Stem-Loop Protein 1,Tfiih Subunit Ssl1,Rna Polymerase II Transcription Factor B Subunit Ssl1,Tfb Subunit Ssl1,Suppre Stem-Loop Protein 1,Tfiih Subunit Ssl1,Rna Polymerase II Transcription Factor B Subunit Ssl1,Tfb Subunit Ssl1,Suppre Stem-Loop Protein 1,Tfiih Subunit Ssl1,Rna Polymerase II Transcription Factor B Subunit Ssl1,Tfb Subunit Ssl1,Suppre Stem-Loop Protein 1;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae;
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Ssl1, Ylr005w
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: General Transcription And Dna Repair Factor Iih H Subunit Xpb;
Chain: 7
Synonym: Tfiih Subunit Xpb,Dna Repair Helicase Rad25,Rna Po II Transcription Factor B Subunit Ssl2,Tfb Subunit Ssl2,Sup Stem-Loop Mutation 2,Tfiih Subunit Xpb,Dna Repair Helicase Polymerase II Transcription Factor B Subunit Ssl2,Tfb Subun Suppressor Of Stem-Loop Mutation 2,Tfiih Subunit Xpb,Dna Re Helicase Rad25,Rna Polymerase II Transcription Factor B Sub Tfb Subunit Ssl2,Suppressor Of Stem-Loop Mutation 2,Tfiih S Xpb,Dna Repair Helicase Rad25,Rna Polymerase II Transcripti B Subunit Ssl2,Tfb Subunit Ssl2,Suppressor Of Stem-Loop Mut Tfiih Subunit Xpb,Dna Repair Helicase Rad25,Rna Polymerase Transcription Factor B Subunit Ssl2,Tfb Subunit Ssl2,Suppre Stem-Loop Mutation 2;
Ec: 3.6.4.12,3.6.4.12,3.6.4.12,3.6.4.12,3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Ssl2, Lom3, Rad25, Uvs112, Yil143c
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Unknown Protein
Chain: Z

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: a
Synonym: Mediator Complex Subunit 6
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Med6, Mtr32, Yhr058c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: b
Synonym: Mediator Complex Subunit 8
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Med8, Ybr193c, Ybr1403
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: c
Synonym: Mediator Complex Subunit 11
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Med11, Ymr112c, Ym9718.11c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: d
Synonym: Mediator Complex Subunit 17,Suppressor Of Rna Poly 4;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Srb4, Med17, Yer022w
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: e
Synonym: Mediator Complex Subunit 18,Suppressor Of Rna Poly 5;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Srb5, Med18, Ygr104c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: f
Synonym: Hyper-Recombination Suppressor Protein 2,Mediator Subunit 20,Suppressor Of Rna Polymerase B 2;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Srb2, Hrs2, Med20, Yhr041c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: g
Synonym: Mediator Complex Subunit 22,Suppressor Of Rna Poly 6;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Srb6, Med22, Ybr253w, Ybr1721
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: h
Synonym: Mediator Complex Subunit 4,Mediator Complex Subuni Mediator Complex Subunit 4;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae;
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Med4, Yor174w, O3630
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: I
Synonym: Mediator Complex Subunit 7
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Med7, Yol135c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: j
Synonym: Chromosome Segregation Protein 2,Mediator Complex
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Cse2, Med9, Ynr010w, N2046
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: k
Synonym: Mediator Complex Subunit 10,Negative Regulator Of Protein 2;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Nut2, Med10, Ypr168w, P9325.2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: l
Synonym: Glucose Repression Regulatory Protein 1,Mediator C Subunit 14;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Rgr1, Med14, Ylr071c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: m
Synonym: Hypoxic Gene Repressor Protein 3,Mediator Complex 19,Negative Regulator Of Urs2 Protein 3,Snf1 Suppressor Pro
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Rox3, Med19, Nut3, Ssn7, Ybl093c, Ybl0837
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: n
Synonym: Mediator Complex Subunit 21,Rnapii Complex Compone Suppressor Of Rna Polymerase B 7;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Srb7, Med21, Ydr308c, D9740.17
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Mediator Of Rna Polymerase II Transcription Subun Mediator Of Rna Polymerase II Transcription Subunit 31;
Chain: o
Synonym: Hpr1 Suppressor Protein 1,Mediator Complex Subunit Suppressor Protein 1,Mediator Complex Subunit 31;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Soh1, Med31, Ygl127c, G2864
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.80 Å
ligand MG, SF4, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3

  • holo TFIIH complex
  • 4

  • holo TFIIH complex
  • 5

  • holo TFIIH complex
  • 6
  • ubiquitin protein ligase act...


  • 7


    A
  • RNA-directed 5'-3' RNA polym...


  • B
  • RNA-directed 5'-3' RNA polym...


  • C
  • RNA-directed 5'-3' RNA polym...


  • D
  • RNA-directed 5'-3' RNA polym...


  • E
  • RNA-directed 5'-3' RNA polym...


  • F
  • RNA-directed 5'-3' RNA polym...


  • G
  • RNA-directed 5'-3' RNA polym...


  • H
  • RNA-directed 5'-3' RNA polym...


  • I
  • RNA-directed 5'-3' RNA polym...


  • J
  • RNA-directed 5'-3' RNA polym...

  • DNA-directed RNA polymerase ...
  • K
  • RNA-directed 5'-3' RNA polym...


  • L
  • RNA-directed 5'-3' RNA polym...


  • M


    O


    Q


    R

  • transcription factor TFIIF c...
  • U
  • transcription cofactor activ...


  • V


    W


    X


    a


    b


    c


    d
  • transcription factor activit...


  • e


    f


    g


    h


    i


    j


    k


    l


    m


    n


    o


    Primary referenceStructures of transcription pre-initiation complex with TFIIH and Mediator., Schilbach S, Hantsche M, Tegunov D, Dienemann C, Wigge C, Urlaub H, Cramer P, Nature. 2017 Nov 9;551(7679):204-209. doi: 10.1038/nature24282. Epub 2017 Nov 1. PMID:29088706
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1428 Kb) [Save to disk]
  • Biological Unit Coordinates (5oqm.pdb1.gz) 1378 Kb
  • LPC: Ligand-Protein Contacts for 5OQM
  • CSU: Contacts of Structural Units for 5OQM
  • Retrieve 5OQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OQM from S2C, [Save to disk]
  • View 5OQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OQM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5oqm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oqm_n] [5oqm_o] [5oqm_W] [5oqm_A] [5oqm_O] [5oqm_e] [5oqm_7] [5oqm_0] [5oqm_1] [5oqm_m] [5oqm_6] [5oqm_K] [5oqm_Q] [5oqm_i] [5oqm_V] [5oqm_F] [5oqm_d] [5oqm_g] [5oqm_R] [5oqm_U] [5oqm_J] [5oqm_c] [5oqm_b] [5oqm_D] [5oqm_f] [5oqm_j] [5oqm_B] [5oqm_k] [5oqm_4] [5oqm_G] [5oqm_T] [5oqm_5] [5oqm_l] [5oqm_I] [5oqm_H] [5oqm_M] [5oqm_a] [5oqm_h] [5oqm_E] [5oqm_Z] [5oqm_N] [5oqm_X] [5oqm_3] [5oqm_L] [5oqm_2] [5oqm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OQM
  • Community annotation for 5OQM at PDBWiki (http://pdbwiki.org)

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