5OQN Cell Cycle date Aug 14, 2017
title Crystal Structure Of The S. Cerevisiae Condensin Ycg1-Brn1 S Bound To Dna (Short Kleisin Loop)
authors M.Kschonsak, M.Hassler, C.H.Haering
compound source
Molecule: Condensin Complex Subunit 3
Chain: A
Synonym: Capg Homolog
Engineered: Yes
Other_details: Loop Deletion: 499-555
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Gene: Ycg1, Ycs5, Ydr325w
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K12
Expression_system_variant: Rosetta (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn

Molecule: Condensin Complex Subunit 2
Chain: B
Synonym: Barren Homolog,Caph Homolog
Engineered: Yes
Other_details: 384-529 Loop Deletion: 418-444

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Gene: Brn1, Ybl097w, Ybl0830
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K12
Expression_system_variant: Rosetta (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn

Molecule: Dna (5'- D(Gpaptpgptpgptpapgpcptpapcpapcpaptpc)-3'
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.249 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.149 116.220 155.518 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes., Kschonsak M, Merkel F, Bisht S, Metz J, Rybin V, Hassler M, Haering CH, Cell. 2017 Oct 4. pii: S0092-8674(17)31057-7. doi: 10.1016/j.cell.2017.09.008. PMID:28988770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • Biological Unit Coordinates (5oqn.pdb1.gz) 315 Kb
  • CSU: Contacts of Structural Units for 5OQN
  • Structure Factors (213 Kb)
  • Retrieve 5OQN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OQN from S2C, [Save to disk]
  • View 5OQN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OQN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5oqn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oqn_A] [5oqn_C] [5oqn_B] [5oqn_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OQN
  • Community annotation for 5OQN at PDBWiki (http://pdbwiki.org)

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