5OQW Apoptosis date Aug 14, 2017
title Xiap In Complex With Small Molecule
authors P.A.Williams
compound source
Molecule: E3 Ubiquitin-Protein Ligase Xiap
Chain: A, B
Synonym: Baculoviral Iap Repeat-Containing Protein 4,Iap-Li Protein,Hilp,Inhibitor Of Apoptosis Protein 3,Hiap3,Ring-Ty Ubiquitin Transferase Xiap,X-Linked Inhibitor Of Apoptosis Linked Iap;
Ec: 2.3.2.27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xiap, Api3, Birc4, Iap3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Pet28b
symmetry Space Group: P 41 21 2
R_factor 0.213 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.380 99.380 106.733 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand A4E, NA, ZN enzyme Transferase E.C.2.3.2.27 BRENDA
Primary referenceASTX660, a Novel Non-peptidomimetic Antagonist of cIAP1/2 and XIAP, Potently Induces TNFalpha-Dependent Apoptosis in Cancer Cell Lines and Inhibits Tumor Growth., Ward GA, Lewis EJ, Ahn JS, Johnson CN, Lyons JF, Martins V, Munck JM, Rich SJ, Smyth T, Thompson NT, Williams PA, Wilsher NE, Wallis NG, Chessari G, Mol Cancer Ther. 2018 Apr 25. pii: 1535-7163.MCT-17-0848. doi:, 10.1158/1535-7163.MCT-17-0848. PMID:29695633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (5oqw.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 5OQW
  • CSU: Contacts of Structural Units for 5OQW
  • Structure Factors (328 Kb)
  • Retrieve 5OQW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OQW from S2C, [Save to disk]
  • View 5OQW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OQW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oqw_A] [5oqw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OQW
  • Community annotation for 5OQW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science